Messages by Date
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2021/02/23
[aroma.affymetrix] Question: snp list from Affymetirx microarray files
Avichai Reich
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2020/11/13
Re: [aroma.affymetrix] Error with process function: package sfit not found
Mirko Pisati
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2020/11/12
Re: [aroma.affymetrix] Error with process function: package sfit not found
Henrik Bengtsson
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2020/11/12
[aroma.affymetrix] Error with process function: package sfit not found
Mirko Pisati
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2019/11/01
[aroma.affymetrix] Re: cant get aroma to load
Pierre Neuvial
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2019/10/30
[aroma.affymetrix] cant get aroma to load
Sreya Mukherjee
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2019/03/11
[aroma.affymetrix] writeRegions of poor SNP6 arrays failed
thomas . grombacher
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2018/09/13
Re: [aroma.affymetrix] Re: CalMaTe model fitting error
Henrik Bengtsson
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2018/09/13
[aroma.affymetrix] Re: CalMaTe model fitting error
thomas . grombacher
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2018/09/13
[aroma.affymetrix] CalMaTe model fitting error
thomas . grombacher
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2018/08/04
[aroma.affymetrix] GcRMaBackgroundCorrection problem with HTA2.0
Angel Rubio
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2018/05/30
[aroma.affymetrix] Re: ACNE getGenomeInformation(cdf) failed
ckong
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2018/04/17
[aroma.affymetrix] Re: transcript and exon level analysis for detection of alternative splicings
Sanjeev Sariya
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2018/04/16
[aroma.affymetrix] Re: RmaPlm and ExonRmaPlm
Sanjeev Sariya
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2018/04/12
[aroma.affymetrix] RmaPlm and ExonRmaPlm
Sanjeev Sariya
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2018/01/19
[aroma.affymetrix] CytoscanHD array cdf file for b38/hg38
Phuc Hoang
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2017/12/22
Re: [aroma.affymetrix] Error using RMA
Pabita Saud
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2017/12/22
Re: [aroma.affymetrix] Error using RMA
Henrik Bengtsson
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2017/12/22
Re: [aroma.affymetrix] Error using RMA
Pabita Saud
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2017/12/19
Re: [aroma.affymetrix] Error writing to connection
Karyn Meltz Steinberg
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2017/12/18
Re: [aroma.affymetrix] Error writing to connection
Henrik Bengtsson
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2017/12/18
[aroma.affymetrix] Error writing to connection
Karyn Meltz Steinberg
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2017/11/24
Re: [aroma.affymetrix] Error: object 'csC' not found.
Henrik Bengtsson
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2017/11/24
Re: [aroma.affymetrix] Error: object 'csC' not found.
321bixin
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2017/11/24
Re: [aroma.affymetrix] Error: object 'csC' not found.
321bixin
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2017/11/23
Re: [aroma.affymetrix] Error: object 'csC' not found.
Henrik Bengtsson
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2017/11/13
Re: [aroma.affymetrix] Error: object 'csC' not found.
ali jan
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2017/11/13
[aroma.affymetrix] object csC not found
ali jan
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2017/10/17
[aroma.affymetrix] Using Perl script to create flat file
PS
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2017/09/01
Re: [aroma.affymetrix] CbsModel or writeRegions error
Henrik Bengtsson
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2017/08/31
Re: [aroma.affymetrix] CbsModel or writeRegions error
Emanuel Gonçalves
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2017/08/31
Re: [aroma.affymetrix] CbsModel or writeRegions error
Henrik Bengtsson
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2017/08/31
Re: [aroma.affymetrix] CbsModel or writeRegions error
Emanuel Gonçalves
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2017/08/31
Re: [aroma.affymetrix] CbsModel or writeRegions error
Henrik Bengtsson
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2017/08/31
[aroma.affymetrix] CbsModel or writeRegions error
Emanuel Gonçalves
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2017/07/12
Re: [aroma.affymetrix] Re: Affymetrix Oncoscan library files
Francesca Scellato
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2017/07/10
Re: [aroma.affymetrix] Re: Affymetrix Oncoscan library files
Keith C
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2017/07/10
Re: [aroma.affymetrix] Re: Affymetrix Oncoscan library files
Keith C
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2017/07/10
Re: [aroma.affymetrix] Re: Affymetrix Oncoscan library files
Michael Baudis
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2017/07/10
Re: [aroma.affymetrix] Re: Affymetrix Oncoscan library files
Keith C
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2017/07/10
Re: [aroma.affymetrix] Re: Affymetrix Oncoscan library files
Francesca Scellato
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2017/06/22
Re: [aroma.affymetrix] CBS input dataframe
Emanuel Gonçalves
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2017/06/21
Re: [aroma.affymetrix] CBS input dataframe
Emanuel Gonçalves
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2017/06/20
Re: [aroma.affymetrix] CBS input dataframe
Henrik Bengtsson
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2017/06/20
Re: [aroma.affymetrix] CBS input dataframe
Emanuel Gonçalves
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2017/06/20
Re: [aroma.affymetrix] CBS input dataframe
Emanuel Gonçalves
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2017/06/20
Re: [aroma.affymetrix] CBS input dataframe
Henrik Bengtsson
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2017/06/20
[aroma.affymetrix] CBS input dataframe
Emanuel Gonçalves
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2017/04/13
[aroma.affymetrix] CalMaTe running error with function "divideBy"
Qingyao Huang
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2017/04/07
[aroma.affymetrix] Gene ST array summarisation by probeset?
Sophie Marion de Procé
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2017/04/05
Re: [aroma.affymetrix] AffymetrixCdfFile$byChipType -- Argument 'nbrOfUnits' contains 1 NA value(s)
Sophie Marion de Procé
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2017/04/05
RE: [aroma.affymetrix] AffymetrixCdfFile$byChipType -- Argument 'nbrOfUnits' contains 1 NA value(s)
Hooiveld, Guido
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2017/04/03
[aroma.affymetrix] AffymetrixCdfFile$byChipType -- Argument 'nbrOfUnits' contains 1 NA value(s)
Sophie Marion de Procé
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2017/03/23
[aroma.affymetrix] aroma.affymetrix 3.1.0 release
Henrik Bengtsson
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2017/03/07
[aroma.affymetrix] Re: How to extract .CEL files from .DTT file
Renuka Kandhaya Pillai
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2017/03/03
[aroma.affymetrix] Re: How to extract .CEL files from .DTT file
Guido
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2017/03/02
[aroma.affymetrix] How to extract .CEL files from .DTT file
Renuka Kandhaya Pillai
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2016/11/01
[aroma.affymetrix] Re: Running multiple pairs through Paired PSCBS
Amy Sherborne
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2016/08/07
Re: [aroma.affymetrix] troubles in doing PCR fragment length normalization AROMA3.0
Henrik Bengtsson
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2016/08/07
Re: [aroma.affymetrix] Error while setting up AffymetrixCelSet
Henrik Bengtsson
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2016/08/01
[aroma.affymetrix] Error while setting up AffymetrixCelSet
Marijke VAN MOERBEKE
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2016/07/14
AW: [aroma.affymetrix] troubles in doing PCR fragment length normalization AROMA3.0
Thomas Grombacher
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2016/07/13
Re: [aroma.affymetrix] troubles in doing PCR fragment length normalization AROMA3.0
Henrik Bengtsson
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2016/07/13
[aroma.affymetrix] troubles in doing PCR fragment length normalization AROMA3.0
thomas . grombacher
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2016/07/12
[aroma.affymetrix] Using aroma.affymetrix to perform QC
Bernard Omolo
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2016/07/05
Re: [aroma.affymetrix] CytoScanHD_Array: problems with CbsModel(), 'Failed to locate Class object for class 'FutureError'
Henrik Bengtsson
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2016/07/04
Re: [aroma.affymetrix] CytoScanHD_Array: problems with CbsModel(), 'Failed to locate Class object for class 'FutureError'
roman.hillje via aroma.affymetrix
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2016/07/01
Re: [aroma.affymetrix] CytoScanHD_Array: problems with CbsModel(), 'Failed to locate Class object for class 'FutureError'
Henrik Bengtsson
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2016/07/01
Re: [aroma.affymetrix] CytoScanHD_Array: problems with CbsModel(), 'Failed to locate Class object for class 'FutureError'
Henrik Bengtsson
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2016/07/01
Re: [aroma.affymetrix] CytoScanHD_Array: problems with CbsModel(), 'Failed to locate Class object for class 'FutureError'
roman.hillje via aroma.affymetrix
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2016/07/01
Re: [aroma.affymetrix] CytoScanHD_Array: problems with CbsModel(), 'Failed to locate Class object for class 'FutureError'
Henrik Bengtsson
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2016/07/01
[aroma.affymetrix] CytoScanHD_Array: problems with CbsModel(), 'Failed to locate Class object for class 'FutureError'
roman.hillje via aroma.affymetrix
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2016/06/09
[aroma.affymetrix] Running multiple pairs through Paired PSCBS
Gaius Augustus
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2016/05/13
Re: [aroma.affymetrix] "Error: Failed to retrieve genome information" + paired samples
Henrik Bengtsson
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2016/05/13
[aroma.affymetrix] "Error: Failed to retrieve genome information" + paired samples
Gaius Augustus
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2016/04/23
Re: [aroma.affymetrix] Incorporating Tumor Purity for ASCRMA / PSCBS
Henrik Bengtsson
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2016/04/22
[aroma.affymetrix] Incorporating Tumor Purity for ASCRMA / PSCBS
Kevin McCormick
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2016/03/31
[aroma.affymetrix] GcRmaBackgroundCorrection
Krzysztof
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2016/03/25
Re: [aroma.affymetrix] doCRMAv2, Error: The fit function for requested AvgPlm flavor failed: median
Henrik Bengtsson
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2016/03/25
Re: [aroma.affymetrix] doCRMAv2, Error: The fit function for requested AvgPlm flavor failed: median
C.C.
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2016/03/24
Re: [aroma.affymetrix] doCRMAv2, Error: The fit function for requested AvgPlm flavor failed: median
Henrik Bengtsson
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2016/03/24
Re: [aroma.affymetrix] doCRMAv2, Error: The fit function for requested AvgPlm flavor failed: median
Henrik Bengtsson
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2016/03/24
Re: [aroma.affymetrix] doCRMAv2, Error: The fit function for requested AvgPlm flavor failed: median
C.C.
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2016/03/24
Re: [aroma.affymetrix] doCRMAv2, Error: The fit function for requested AvgPlm flavor failed: median
Henrik Bengtsson
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2016/03/24
[aroma.affymetrix] doCRMAv2, Error: The fit function for requested AvgPlm flavor failed: median
C.C.
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2016/03/02
Re: [aroma.affymetrix] Extracting probe level intensities
Henrik Bengtsson
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2016/03/02
[aroma.affymetrix] Extracting probe level intensities
sanj
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2016/02/08
Re: [aroma.affymetrix] Re: CbsModel parameters
mbaudis
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2016/02/04
Re: [aroma.affymetrix] Re: CbsModel parameters
Henrik Bengtsson
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2016/02/02
Re: [aroma.affymetrix] Re: CbsModel parameters
mbaudis
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2016/01/13
Re: [aroma.affymetrix] Error: object 'csC' not found.
Henrik Bengtsson
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2016/01/13
[aroma.affymetrix] Error: object 'csC' not found.
wxpyzr
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2016/01/11
[aroma.affymetrix] aroma.affymetrix 3.0.0 release (10 years today!) - now with parallel processing
Henrik Bengtsson
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2016/01/05
Re: [aroma.affymetrix] Dealing with batches
Peter Savas
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2016/01/05
Re: [aroma.affymetrix] Dealing with batches
Pierre Neuvial
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2016/01/05
[aroma.affymetrix] Dealing with batches
Peter Savas
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2015/11/13
Re: [aroma.affymetrix] Re: Affymetrix Oncoscan library files
Henrik Bengtsson
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2015/11/12
Re: [aroma.affymetrix] Re: Affymetrix Oncoscan library files
Keith C
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2015/11/12
Re: [aroma.affymetrix] Re: Affymetrix Oncoscan library files
Henrik Bengtsson
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2015/11/12
Re: [aroma.affymetrix] Re: Affymetrix Oncoscan library files
Michael Baudis
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2015/11/11
[aroma.affymetrix] Re: Affymetrix Oncoscan library files
Keith C
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2015/10/26
[aroma.affymetrix] aroma.affymetrix v2.14.0 released
Henrik Bengtsson
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2015/10/21
Re: [aroma.affymetrix] Re: Affymetrix Oncoscan library files
Henrik Bengtsson
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2015/10/20
[aroma.affymetrix] Re: Affymetrix Oncoscan library files
Keith C
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2015/10/13
[aroma.affymetrix] segmented copy number to 'per gene' calls
thomas . grombacher
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2015/08/17
Re: [aroma.affymetrix] "How to: Create a CDF file from Bioconductor Platform Design (PD) Info package" is miserably failing
Guillaume Devailly
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2015/08/14
Re: [aroma.affymetrix] "How to: Create a CDF file from Bioconductor Platform Design (PD) Info package" is miserably failing
Henrik Bengtsson
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2015/08/14
[aroma.affymetrix] Re: MeDIP pipeline?
Guillaume Devailly
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2015/08/14
[aroma.affymetrix] "How to: Create a CDF file from Bioconductor Platform Design (PD) Info package" is miserably failing
Guillaume Devailly
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2015/08/14
Re: [aroma.affymetrix] Filtering in FIRMA
Henrik Bengtsson
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2015/08/12
[aroma.affymetrix] Analysis of the HTA 2.0 Data
Marijke Van Moerbeke
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2015/08/12
[aroma.affymetrix] Filtering in FIRMA
Marijke Van Moerbeke
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2015/08/02
[aroma.affymetrix] Implementation of DABG for HTAv2
Angel Rubio
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2015/07/01
[aroma.affymetrix] MeDIP pipeline?
bruce moran
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2015/06/21
[aroma.affymetrix] Affymetrix HuGene exon expression values / splicing
rene.rotterdam
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2015/06/16
Re: [aroma.affymetrix] Getting error with AffymetrixCdfFile$fromChipType command
Henrik Bengtsson
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2015/06/10
[aroma.affymetrix] Getting error with AffymetrixCdfFile$fromChipType command
anarayan
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2015/06/10
Re: [aroma.affymetrix] doCRMAv2 vs individual normalization steps
Henrik Bengtsson
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2015/06/09
[aroma.affymetrix] doCRMAv2 vs individual normalization steps
Arshi Arora
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2015/06/05
Re: [aroma.affymetrix] Changing the Aroma settings (RMA MedianPolish threshold ) in the latest version of the aroma.affymetrix
Henrik Bengtsson
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2015/06/05
[aroma.affymetrix] Re: HuEx-1_0-st-v2 gcRMA
Tim Sweeney
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2015/06/05
Re: [aroma.affymetrix] Changing the Aroma settings (RMA MedianPolish threshold ) in the latest version of the aroma.affymetrix
sanj
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2015/06/04
Re: [aroma.affymetrix] mufColumns on genes with more than 500 probes across the gene
Mark Robinson
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2015/06/04
[aroma.affymetrix] HuEx-1_0-st-v2 gcRMA
Tim Sweeney
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2015/06/04
Re: [aroma.affymetrix] Changing the Aroma settings (RMA MedianPolish threshold ) in the latest version of the aroma.affymetrix
Henrik Bengtsson
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2015/06/04
[aroma.affymetrix] mufColumns on genes with more than 500 probes across the gene
Iain
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2015/06/04
[aroma.affymetrix] Changing the Aroma settings (RMA MedianPolish threshold ) in the latest version of the aroma.affymetrix
sanjana
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2015/06/01
Re: [aroma.affymetrix] cfit error while doCRMAv2
Henrik Bengtsson
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2015/06/01
Re: [aroma.affymetrix] cfit error while doCRMAv2
Arshi Arora
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2015/06/01
Re: [aroma.affymetrix] extract LRR and BAF from ACNE results
hongen xu
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2015/05/29
Re: [aroma.affymetrix] cfit error while doCRMAv2
Henrik Bengtsson
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2015/05/29
Re: [aroma.affymetrix] cfit error while doCRMAv2
Henrik Bengtsson
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2015/05/29
Re: [aroma.affymetrix] cfit error while doCRMAv2
arshi
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2015/05/29
Re: [aroma.affymetrix] extract LRR and BAF from ACNE results
Henrik Bengtsson
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2015/05/29
Re: [aroma.affymetrix] cfit error while doCRMAv2
Henrik Bengtsson
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2015/05/29
[aroma.affymetrix] cfit error while doCRMAv2
arshi
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2015/05/29
[aroma.affymetrix] extract LRR and BAF from ACNE results
hongen xu
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2015/05/20
Re: [aroma.affymetrix] Adjusting for sample-specific median signal prior to segmentation
Henrik Bengtsson
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2015/05/19
[aroma.affymetrix] Adjusting for sample-specific median signal prior to segmentation
Benilton Carvalho
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2015/03/23
[aroma.affymetrix] Re: from doASCRMAv2 to extractTotalAndFreqB
Georg
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2015/03/18
[aroma.affymetrix] from doASCRMAv2 to extractTotalAndFreqB
Georg
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2015/03/14
[aroma.affymetrix] Re: Trouble Getting Mouse annotations after FIRMA run.
Rishi Das Roy
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2015/03/13
Re: [aroma.affymetrix] Error when calling doCRMAv2
Henrik Bengtsson
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2015/03/13
[aroma.affymetrix] Error when calling doCRMAv2
Georg
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2015/03/12
[aroma.affymetrix] brainarray ENSG or ENST to perform FIRMA
Rishi Das Roy
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2015/03/10
Re: [aroma.affymetrix] annotation file update
Henrik Bengtsson
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2015/03/10
[aroma.affymetrix] annotation file update
Francois
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2015/03/07
Re: [aroma.affymetrix] Re: strange result from PSCBS
Henrik Bengtsson
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2015/03/05
[aroma.affymetrix] Error when running PSCBS
Chengyu Liu
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2015/02/25
Re: [aroma.affymetrix] Re: strange result from PSCBS
Henrik Bengtsson
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2015/02/24
Re: [aroma.affymetrix] Re: strange result from PSCBS
Chengyu Liu
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2015/02/23
Re: [aroma.affymetrix] Re: strange result from PSCBS
Henrik Bengtsson
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2015/02/23
Re: [aroma.affymetrix] Re: strange result from PSCBS
Chengyu Liu
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2015/02/23
Re: [aroma.affymetrix] Errors occurred in the PSCBS analysis
Chengyu Liu
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2015/02/18
Re: [aroma.affymetrix] Re: strange result from PSCBS
Henrik Bengtsson
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2015/02/18
Re: [aroma.affymetrix] Errors occurred in the PSCBS analysis
Henrik Bengtsson
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2015/02/17
[aroma.affymetrix] Re: strange result from PSCBS
Chengyu Liu
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2015/02/17
[aroma.affymetrix] strange result from PSCBS
Chengyu Liu
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2015/02/10
[aroma.affymetrix] Don't go until...
elsa . chacko
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2015/02/09
[aroma.affymetrix] Errors occurred in the PSCBS analysis
Chengyu Liu
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2015/02/09
Re: [aroma.affymetrix] After running doCRMAv2, I got chromosome 24,25
Chengyu Liu
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2015/02/04
Re: [aroma.affymetrix] After running doCRMAv2, I got chromosome 24,25
Henrik Bengtsson
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2015/02/04
Re: [aroma.affymetrix] Re: Regarding the copy number states and further processing
Sam Padmanabhuni
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2015/02/04
Re: [aroma.affymetrix] Re: Regarding the copy number states and further processing
Chengyu Liu
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2015/02/04
Re: [aroma.affymetrix] sfit
Juanjo Lozano
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2015/02/04
Re: [aroma.affymetrix] Re: Regarding the copy number states and further processing
Sam Padmanabhuni
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2015/02/04
Re: [aroma.affymetrix] Re: Regarding the copy number states and further processing
Chengyu Liu
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2015/02/04
[aroma.affymetrix] After running doCRMAv2, I got chromosome 24,25
Chengyu Liu
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2015/01/29
[aroma.affymetrix] Re: Does exportTotalCnRatioSet function calculate Allelic-specific copy numbers ?
Chengyu Liu
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2015/01/28
[aroma.affymetrix] Does exportTotalCnRatioSet function calculate Allelic-specific copy numbers ?
Chengyu Liu
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2015/01/26
Re: [aroma.affymetrix] fit CBS model error
Henrik Bengtsson
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2015/01/26
Re: [aroma.affymetrix] fit CBS model error
Jerry Liu
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2015/01/26
Re: [aroma.affymetrix] fit CBS model error
Henrik Bengtsson
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2015/01/26
Re: [aroma.affymetrix] fit CBS model error
Jerry Liu
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2015/01/26
Re: [aroma.affymetrix] fit CBS model error
Henrik Bengtsson
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2015/01/26
[aroma.affymetrix] fit CBS model error
Jerry Liu
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2015/01/23
Re: [aroma.affymetrix] Questions on extracting probeset summaries
Qingzhou Zhang
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2015/01/23
Re: [aroma.affymetrix] Questions on extracting probeset summaries
Henrik Bengtsson
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2015/01/23
Re: [aroma.affymetrix] Questions on extracting probeset summaries
Qingzhou Zhang
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2015/01/23
Re: [aroma.affymetrix] Questions on extracting probeset summaries
Henrik Bengtsson
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2015/01/23
Re: [aroma.affymetrix] Questions on extracting probeset summaries
Henrik Bengtsson
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2015/01/23
Re: [aroma.affymetrix] Questions on extracting probeset summaries
Henrik Bengtsson
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2015/01/23
Re: [aroma.affymetrix] Questions on extracting probeset summaries
Henrik Bengtsson
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2015/01/23
Re: [aroma.affymetrix] Questions on extracting probeset summaries
Qingzhou Zhang
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2015/01/23
Re: [aroma.affymetrix] Re: Regarding the copy number states and further processing
Sam Padmanabhuni
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2015/01/22
Re: [aroma.affymetrix] Questions on extracting probeset summaries
Henrik Bengtsson
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2015/01/22
Re: [aroma.affymetrix] Questions on extracting probeset summaries
Qingzhou Zhang
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2015/01/22
[aroma.affymetrix] aroma.affymetrix v2.13.0 released
Henrik Bengtsson
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2015/01/22
Re: [aroma.affymetrix] Re: Regarding the copy number states and further processing
Henrik Bengtsson
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2015/01/22
Re: [aroma.affymetrix] Questions on extracting probeset summaries
Henrik Bengtsson
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2015/01/22
[aroma.affymetrix] Questions on extracting probeset summaries
Qingzhou Zhang
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2015/01/22
[aroma.affymetrix] Re: sfit
Chengyu Liu
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2015/01/22
[aroma.affymetrix] Re: Regarding the copy number states and further processing
Chengyu Liu
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2015/01/21
Re: [aroma.affymetrix] sfit
Henrik Bengtsson
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2015/01/21
[aroma.affymetrix] Re: Regarding the copy number states and further processing
Sam Padmanabhuni
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2015/01/21
[aroma.affymetrix] Re: Regarding the copy number states and further processing
Chengyu Liu
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2015/01/21
[aroma.affymetrix] sfit
Juanjo Lozano
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2015/01/20
[aroma.affymetrix] Re: Regarding the copy number states and further processing
Sam Padmanabhuni
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2015/01/20
[aroma.affymetrix] Re: Regarding the copy number states and further processing
Chengyu Liu
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2015/01/20
[aroma.affymetrix] Re: Regarding the copy number states and further processing
Sam Padmanabhuni