aroma-affymetrix  

Messages by Date

• 2012/05/18 [aroma.affymetrix] Exception Error when computing non-paired CBS: Exception: .. Too many non-finite values ...... sean nj
• 2012/05/17 Re: [aroma.affymetrix] Error when Creating binary data files containing copy number estimates (Agilent HG-CGH-244A) sean nj
• 2012/05/17 Re: [aroma.affymetrix] Error when Creating binary data files containing copy number estimates (Agilent HG-CGH-244A) sean nj
• 2012/05/16 Re: [aroma.affymetrix] Error when Creating binary data files containing copy number estimates (Agilent HG-CGH-244A) sean nj
• 2012/05/16 Re: [aroma.affymetrix] Error when Creating binary data files containing copy number estimates (Agilent HG-CGH-244A) Pierre Neuvial
• 2012/05/16 Re: [aroma.affymetrix] Error when Creating binary data files containing copy number estimates (Agilent HG-CGH-244A) sean nj
• 2012/05/15 [aroma.affymetrix] Error when Creating binary data files containing copy number estimates (Agilent HG-CGH-244A) sean nj
• 2012/05/08 Re: [aroma.affymetrix] Paired CBS Yu Song
• 2012/05/08 Re: [aroma.affymetrix] Paired CBS Michelle
• 2012/05/08 [aroma.affymetrix] Aroma Affymetrix (v 2.5.0) installation dependencies Jay
• 2012/05/08 Re: [aroma.affymetrix] [aroma.aff​ymetrix] Error when converting CustomCDF to binary format! Pierre Neuvial
• 2012/05/08 Re: [aroma.affymetrix] Paired CBS Pierre Neuvial
• 2012/05/07 Re: [aroma.affymetrix] Paired CBS Michelle
• 2012/05/07 [aroma.affymetrix] [aroma.aff​ymetrix] Error when converting CustomCDF to binary format! sean nj
• 2012/05/07 Re: [aroma.affymetrix] UCSC links in the regions.xls file pointing to wrong genome build? Marcin Krzystanek
• 2012/05/07 [aroma.affymetrix] UCSC links in the regions.xls file pointing to wrong genome build? Sebastian Burgstaller
• 2012/05/05 [aroma.affymetrix] Generating common variance from tumour/normal pair ratios Sathish Periyasamy
• 2012/04/30 [aroma.affymetrix] Tumor vs drug-treated-tumor Marcin
• 2012/04/18 Re: [aroma.affymetrix] Error in Paired PSCBS with CytoScanHD Pierre Neuvial
• 2012/04/18 [aroma.affymetrix] Error in Paired PSCBS with CytoScanHD Sathish Periyasamy
• 2012/04/16 Re: [aroma.affymetrix] object 'cns' not found Henrik Bengtsson
• 2012/04/16 Re: [aroma.affymetrix] object 'cns' not found Pierre Neuvial
• 2012/04/16 [aroma.affymetrix] Failed to split tumor and normal samples Andyusa
• 2012/04/16 [aroma.affymetrix] object 'cns' not found Andyusa
• 2012/04/11 Re: [aroma.affymetrix] Using aroma with Cytoscan HD array data Mike
• 2012/04/10 Re: [aroma.affymetrix] Using aroma with Cytoscan HD array data Henrik Bengtsson
• 2012/04/10 Re: [aroma.affymetrix] Using aroma with Cytoscan HD array data Mike
• 2012/04/10 [aroma.affymetrix] Re: ACNE getGenomeInformation(cdf) failed Frederic Foucault
• 2012/04/05 Re: [aroma.affymetrix] Re: ACNE getGenomeInformation(cdf) failed Henrik Bengtsson
• 2012/04/05 Re: [aroma.affymetrix] Re: ACNE getGenomeInformation(cdf) failed Henrik Bengtsson
• 2012/04/05 [aroma.affymetrix] Re: ACNE getGenomeInformation(cdf) failed Frederic Foucault
• 2012/04/05 Re: [aroma.affymetrix] Re: ACNE getGenomeInformation(cdf) failed Pierre Neuvial
• 2012/04/05 [aroma.affymetrix] Re: ACNE getGenomeInformation(cdf) failed Frederic Foucault
• 2012/04/04 Re: [aroma.affymetrix] ACNE getGenomeInformation(cdf) failed Henrik Bengtsson
• 2012/04/04 [aroma.affymetrix] ACNE getGenomeInformation(cdf) failed Fred Foucault
• 2012/03/30 [aroma.affymetrix] Aroma still crashing on mac 10.7 (lion) Jorge Melendez
• 2012/03/30 [aroma.affymetrix] Re: OSX 10.6 & 10.7 users: Workaround for faulty BioC build of affxparser v1.26.2 Jorge Melendez
• 2012/03/28 Re: [aroma.affymetrix] Inbreds and inferring gender Irsan Kooi
• 2012/03/28 Re: [aroma.affymetrix] Inbreds and inferring gender Irsan Kooi
• 2012/03/27 Re: [aroma.affymetrix] Inbreds and inferring gender Henrik Bengtsson
• 2012/03/27 Re: [aroma.affymetrix] Using Different SNP6 Annotations Fong
• 2012/03/27 Re: [aroma.affymetrix] Error in mac to install updated one Henrik Bengtsson
• 2012/03/27 Re: [aroma.affymetrix] Using Different SNP6 Annotations Henrik Bengtsson
• 2012/03/27 [aroma.affymetrix] aroma.affymetrix v2.5.0 released Henrik Bengtsson
• 2012/03/19 [aroma.affymetrix] Using Different SNP6 Annotations Fong
• 2012/03/15 [aroma.affymetrix] Inbreds and inferring gender Irsan Kooi
• 2012/03/15 [aroma.affymetrix] Re: Naive Genotyping in Mouse Irsan Kooi
• 2012/03/10 Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5 Laurent Malvert
• 2012/03/09 [aroma.affymetrix] Re: read CEL file Henrik Bengtsson
• 2012/03/09 Re: [aroma.affymetrix] Re: List of AromaUnitTotalCnBinaryFile Henrik Bengtsson
• 2012/03/09 [aroma.affymetrix] Re: List of AromaUnitTotalCnBinaryFile Gregory W
• 2012/03/09 [aroma.affymetrix] List of AromaUnitTotalCnBinaryFile Gregory W
• 2012/03/09 Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5 Henrik Bengtsson
• 2012/03/09 [aroma.affymetrix] Re: read CEL file Henrik Bengtsson
• 2012/03/08 Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5 Laurent Malvert
• 2012/03/07 [aroma.affymetrix] Affine Normalisation Dario Strbenac
• 2012/03/07 [aroma.affymetrix] SNPFileCreator for SNP 6.0 nai...@hotmail.com
• 2012/03/06 [aroma.affymetrix] HapMap and CCLE 5 nearest neighbors nai...@hotmail.com
• 2012/03/05 [aroma.affymetrix] Re: read CEL file Henrik Bengtsson
• 2012/03/05 Re: [aroma.affymetrix] getChipEffectSet: entire transcript or exon by exon Henrik Bengtsson
• 2012/03/05 [aroma.affymetrix] Re: read CEL file Henrik Bengtsson
• 2012/03/02 [aroma.affymetrix] Re: read CEL file Henrik Bengtsson
• 2012/03/02 [aroma.affymetrix] getChipEffectSet: entire transcript or exon by exon hiberbear
• 2012/03/01 [aroma.affymetrix] Re: Reading in 5000 Celfiles using aroma. Saif UrRehman
• 2012/02/28 Re: [aroma.affymetrix] Reading in 5000 Celfiles using aroma. Henrik Bengtsson
• 2012/02/28 [aroma.affymetrix] Reading in 5000 Celfiles using aroma. Saif UrRehman
• 2012/02/17 Re: [aroma.affymetrix] Crash in fit(plm) Jean-Paul Abbuehl
• 2012/02/17 Re: [aroma.affymetrix] Paired CBS Henrik Bengtsson
• 2012/02/17 Re: [aroma.affymetrix] Paired CBS Michelle
• 2012/02/14 RE: [aroma.affymetrix] doCRMAv2 error Angelina Chattopadhyay Mukherjee
• 2012/02/13 Re: [aroma.affymetrix] doCRMAv2 error Henrik Bengtsson
• 2012/02/13 [aroma.affymetrix] Re: Documentation of methods Irsan Kooi
• 2012/02/13 RE: [aroma.affymetrix] doCRMAv2 error Angelina Chattopadhyay Mukherjee
• 2012/02/12 Re: [aroma.affymetrix] Re: mutations Henrik Bengtsson
• 2012/02/12 [aroma.affymetrix] Re: mutations sigrid
• 2012/02/12 Re: [aroma.affymetrix] mutations Henrik Bengtsson
• 2012/02/12 [aroma.affymetrix] mutations sigrid
• 2012/02/11 Re: [aroma.affymetrix] Raw data "HapMap270,6.0,CEU,testSet." used in CRMA v2 method yu s
• 2012/02/11 Re: [aroma.affymetrix] Raw data "HapMap270,6.0,CEU,testSet." used in CRMA v2 method Henrik Bengtsson
• 2012/02/11 [aroma.affymetrix] Raw data "HapMap270,6.0,CEU,testSet." used in CRMA v2 method yu s
• 2012/02/10 Re: [aroma.affymetrix] Crash in fit(plm) Henrik Bengtsson
• 2012/02/10 Re: [aroma.affymetrix] Documentation of methods Henrik Bengtsson
• 2012/02/10 Re: [aroma.affymetrix] doCRMAv2 error Henrik Bengtsson
• 2012/02/10 RE: [aroma.affymetrix] doCRMAv2 error Angelina Chattopadhyay Mukherjee
• 2012/02/10 [aroma.affymetrix] Documentation of methods Irsan Kooi
• 2012/02/10 [aroma.affymetrix] Crash in fit(plm) Jean-Paul Abbuehl
• 2012/02/10 [aroma.affymetrix] Re: MOUSEDIVm520650 and CRMAv2 Irsan Kooi
• 2012/02/09 [aroma.affymetrix] Re: error in creating regions.xsl file after gada segmentation Roger
• 2012/02/03 Re: [aroma.affymetrix] Re: Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5 Henrik Bengtsson
• 2012/02/03 [aroma.affymetrix] Re: Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5 Keith Ching
• 2012/02/03 RE: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5 Steven McKinney
• 2012/02/03 [aroma.affymetrix] Re: Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5 Kai
• 2012/02/02 Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5 Kai
• 2012/02/02 RE: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5 Steven McKinney
• 2012/02/02 Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5 Kai
• 2012/02/02 Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5 Keith Ching
• 2012/02/02 Re: [aroma.affymetrix] R crashing with new installation of R-2.14.1 and latest aroma.affymetrix Keith Ching
• 2012/02/02 Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5 Henrik Bengtsson
• 2012/02/02 Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5 Kai
• 2012/02/02 Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5 Henrik Bengtsson
• 2012/02/02 Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5 Keith Ching
• 2012/02/02 Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5 Henrik Bengtsson
• 2012/02/02 Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5 Keith Ching
• 2012/02/02 Re: [aroma.affymetrix] Re: Exception: Internal error. Reference files of non-matching chip types. Henrik Bengtsson
• 2012/02/02 [aroma.affymetrix] Re: Exception: Internal error. Reference files of non-matching chip types. Maxime Tarabichi
• 2012/02/01 Re: [aroma.affymetrix] Installing Aroma Affymetrix Error Fong
• 2012/02/01 Re: [aroma.affymetrix] Installing Aroma Affymetrix Error Henrik Bengtsson
• 2012/02/01 [aroma.affymetrix] Installing Aroma Affymetrix Error Fong
• 2012/02/01 Re: [aroma.affymetrix] doCRMAv2 error Henrik Bengtsson
• 2012/02/01 Re: [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5 Henrik Bengtsson
• 2012/02/01 [aroma.affymetrix] Fixes for Chromosome Explorer in Firefox 9, IE 7, and Safari 5 Keith Ching
• 2012/02/01 [aroma.affymetrix] doCRMAv2 error Angelina Chattopadhyay Mukherjee
• 2012/01/31 Re: [aroma.affymetrix] Create binary data files containing BAF data Henrik Bengtsson
• 2012/01/31 Re: [aroma.affymetrix] Re: Exception: Internal error. Reference files of non-matching chip types. Henrik Bengtsson
• 2012/01/30 [aroma.affymetrix] Re: Exception: Internal error. Reference files of non-matching chip types. Maxime Tarabichi
• 2012/01/30 Re: [aroma.affymetrix] Create binary data files containing BAF data Kai
• 2012/01/30 Re: [aroma.affymetrix] hg18 or hg19 used in ChromosomeExplorer Kai
• 2012/01/27 Re: [aroma.affymetrix] Custom Cdf Henrik Bengtsson
• 2012/01/26 [aroma.affymetrix] Custom Cdf Steve Pederson
• 2012/01/25 Re: [aroma.affymetrix] Re: Exception: Internal error. Reference files of non-matching chip types. Henrik Bengtsson
• 2012/01/25 [aroma.affymetrix] Re: Exception: Internal error. Reference files of non-matching chip types. Maxime Tarabichi
• 2012/01/24 Re: [aroma.affymetrix] Re: Exception: Internal error. Reference files of non-matching chip types. Henrik Bengtsson
• 2012/01/23 [aroma.affymetrix] Re: Exception: Internal error. Reference files of non-matching chip types. Maxime Tarabichi
• 2012/01/21 Re: [aroma.affymetrix] Re: Exception: Internal error. Reference files of non-matching chip types. Henrik Bengtsson
• 2012/01/21 [aroma.affymetrix] Re: Exception: Internal error. Reference files of non-matching chip types. Maxime Tarabichi
• 2012/01/20 Re: [aroma.affymetrix] Create binary data files containing BAF data Henrik Bengtsson
• 2012/01/20 Re: [aroma.affymetrix] Exception: Internal error. Reference files of non-matching chip types. Henrik Bengtsson
• 2012/01/19 Re: [aroma.affymetrix] Exception: Internal error. Reference files of non-matching chip types. Henrik Bengtsson
• 2012/01/19 [aroma.affymetrix] Exception: Internal error. Reference files of non-matching chip types. Maxime Tarabichi
• 2012/01/19 Re: [aroma.affymetrix] Create binary data files containing BAF data Kai
• 2012/01/18 Re: [aroma.affymetrix] ChromosomeExplorer producing zero byte png files Henrik Bengtsson
• 2012/01/18 RE: [aroma.affymetrix] ChromosomeExplorer producing zero byte png files Steven McKinney
• 2012/01/18 Re: [aroma.affymetrix] ChromosomeExplorer producing zero byte png files Henrik Bengtsson
• 2012/01/18 Re: [aroma.affymetrix] ChromosomeExplorer producing zero byte png files Henrik Bengtsson
• 2012/01/17 RE: [aroma.affymetrix] ChromosomeExplorer producing zero byte png files Steven McKinney
• 2012/01/17 Re: [aroma.affymetrix] ChromosomeExplorer producing zero byte png files Henrik Bengtsson
• 2012/01/17 [aroma.affymetrix] ChromosomeExplorer producing zero byte png files Steven McKinney
• 2012/01/15 Re: [aroma.affymetrix] An error message from running PSCBS Henrik Bengtsson
• 2012/01/15 Re: [aroma.affymetrix] An error message from running PSCBS Hoon Kim
• 2012/01/15 Re: [aroma.affymetrix] An error message from running PSCBS Henrik Bengtsson
• 2012/01/15 Re: [aroma.affymetrix] An error message from running PSCBS Henrik Bengtsson
• 2012/01/14 [aroma.affymetrix] OSX 10.6 & 10.7 users: Workaround for faulty BioC build of affxparser v1.26.2 Henrik Bengtsson
• 2012/01/14 Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data Henrik Bengtsson
• 2012/01/14 Re: [aroma.affymetrix] hg18 or hg19 used in ChromosomeExplorer Henrik Bengtsson
• 2012/01/13 [aroma.affymetrix] R crashing with new installation of R-2.14.1 and latest aroma.affymetrix Steven McKinney
• 2012/01/13 Re: [aroma.affymetrix] hg18 or hg19 used in ChromosomeExplorer Kai
• 2012/01/12 Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data D Goode
• 2012/01/12 Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data Henrik Bengtsson
• 2012/01/12 Re: [aroma.affymetrix] -Inf in FIRMA score matrix Henrik Bengtsson
• 2012/01/12 Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data D Goode
• 2012/01/12 Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data Henrik Bengtsson
• 2012/01/12 Re: [aroma.affymetrix] hg18 or hg19 used in ChromosomeExplorer Henrik Bengtsson
• 2012/01/12 Re: [aroma.affymetrix] Create binary data files containing BAF data Henrik Bengtsson
• 2012/01/12 [aroma.affymetrix] Create binary data files containing BAF data Kai
• 2012/01/12 Re: [aroma.affymetrix] hg18 or hg19 used in ChromosomeExplorer Kai
• 2012/01/12 Re: [aroma.affymetrix] Error in fit(plm) Henrik Bengtsson
• 2012/01/12 [aroma.affymetrix] Error in fit(plm) cruckert
• 2012/01/12 [aroma.affymetrix] aroma.affymetrix v2.4.0 released Henrik Bengtsson
• 2012/01/11 Re: [aroma.affymetrix] error message while running segmentByPairedPSCBS Henrik Bengtsson
• 2012/01/10 Re: [aroma.affymetrix] An error message from running PSCBS Henrik Bengtsson
• 2012/01/09 [aroma.affymetrix] An error message from running PSCBS wisekh6
• 2012/01/09 [aroma.affymetrix] -Inf in FIRMA score matrix rene.rotterdam
• 2012/01/08 Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data D Goode
• 2012/01/06 Re: [aroma.affymetrix] Using aroma with Cytoscan HD array data Henrik Bengtsson
• 2012/01/06 Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data Henrik Bengtsson
• 2012/01/06 Re: [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data Henrik Bengtsson
• 2012/01/06 Re: [aroma.affymetrix] error message while running segmentByPairedPSCBS Henrik Bengtsson
• 2012/01/05 [aroma.affymetrix] error message while running segmentByPairedPSCBS Minya Pu
• 2012/01/05 [aroma.affymetrix] Receiving length(uPos) > 0 error when using CytoscanHD data D Goode
• 2012/01/05 Re: [aroma.affymetrix] Re: gcRMA for Gene ST Arrays dbe...@u.washington.edu
• 2012/01/04 [aroma.affymetrix] Re: Using aroma with Cytoscan HD array data D Goode
• 2012/01/04 [aroma.affymetrix] Re: HuEx cdf based on current annotation rene.rotterdam
• 2012/01/04 [aroma.affymetrix] Re: HuEx cdf based on current annotation rene.rotterdam
• 2012/01/03 [aroma.affymetrix] Using aroma with Cytoscan HD array data D Goode
• 2011/12/31 Re: [aroma.affymetrix] error when converting CDF Sean Liang
• 2011/12/31 Re: [aroma.affymetrix] error in creating regions.xsl file after gada segmentation Henrik Bengtsson
• 2011/12/31 Re: [aroma.affymetrix] error when converting CDF Henrik Bengtsson
• 2011/12/30 [aroma.affymetrix] error when converting CDF itshuang
• 2011/12/16 Re: [aroma.affymetrix] error in creating regions.xsl file after gada segmentation Henrik Bengtsson
• 2011/12/16 Re: [aroma.affymetrix] error in creating regions.xsl file after gada segmentation Henrik Bengtsson
• 2011/12/15 Re: [aroma.affymetrix] Combining data from multiple chip types Henrik Bengtsson
• 2011/12/15 Re: [aroma.affymetrix] error in creating regions.xsl file after gada segmentation Henrik Bengtsson
• 2011/12/15 [aroma.affymetrix] error in generationg regions.xls file after gada segmentation Zelha Nil
• 2011/12/15 [aroma.affymetrix] error in creating regions.xsl file after gada segmentation Zelha Nil
• 2011/12/15 RE: [aroma.affymetrix] HuEx cdf based on current annotation Steve Pederson
• 2011/12/14 [aroma.affymetrix] HuEx cdf based on current annotation rene.rotterdam
• 2011/12/13 RE: [aroma.affymetrix] Combining data from multiple chip types Steven McKinney
• 2011/12/13 Re: [aroma.affymetrix] "Rcache file format error" when running "doCRMAv2" with SNP6 copy number data Henrik Bengtsson
• 2011/12/13 Re: [aroma.affymetrix] REMOVE ME Henrik Bengtsson
• 2011/12/13 [aroma.affymetrix] "Rcache file format error" when running "doCRMAv2" with SNP6 copy number data wisekh6
• 2011/12/13 [aroma.affymetrix] REMOVE ME James F. Reid
• 2011/12/12 Re: [aroma.affymetrix] Combining data from multiple chip types Henrik Bengtsson
• 2011/12/12 Re: [aroma.affymetrix] Re: Clarification of Raw CN estimates and CBS mean Henrik Bengtsson
• 2011/12/12 Re: [aroma.affymetrix] hg18 annotation files for SNP6 Henrik Bengtsson
• 2011/12/12 [aroma.affymetrix] Re: Clarification of Raw CN estimates and CBS mean Greg Wall
• 2011/12/12 [aroma.affymetrix] Clarification of Raw CN estimates and CBS mean Gregory W
• 2011/12/09 RE: [aroma.affymetrix] Combining data from multiple chip types Steven McKinney
• 2011/12/08 [aroma.affymetrix] Re: Interpretation of cbsmodel output Les Ander
• 2011/12/08 [aroma.affymetrix] hg18 annotation files for SNP6 wisekh6
• 2011/12/08 Re: [aroma.affymetrix] question about HuGene-1_0-st-v1 gene centric data Henrik Bengtsson

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