Addtional information. 
The file structure is like this,
├── annotationData
│   └── chipTypes
│       └── CytoScanHD_Array
│           ├── CytoScanHD_Array.cdf
│           └── NetAffx
│               └── CytoScanHD_Array_annot.csv
└── rawData
    └── dataset1
        └── CytoScanHD_Array
            ├── 010213-01-NB_(CytoScanHD_Array).CEL
            └── 010213-01-TB_(CytoScanHD_Array).CEL



On Monday, December 15, 2014 3:51:46 PM UTC+2, Chengyu Liu wrote:
>
> Hi,
>
> I am trying to read annotation file of CytoScanHD_Array, but somehow it 
> could not locate it.
>
> I followed the tutorial in the web 
> http://aroma-project.org/setup/annotationData/. I am using NetAffx 
> Annotation Files (I could not find CDF file) .
> I created folder annotationData/chipTypes/CytoScanHD_Array/NetAffx/  and 
> put annotation file CytoScanHD_Array_annot.csv there.
>
> I ran AffymetrixNetAffxCsvFile$byChipType("CytoScanHD_Array") at parent 
> directory of annotationData.
>
> It gave error "Error in grep(pattern, basename(files0)) : invalid 
> 'pattern' argument"
>
> Does anyone know what was wrong ?
>
> Br,
> C.Y
>

-- 
-- 
When reporting problems on aroma.affymetrix, make sure 1) to run the latest 
version of the package, 2) to report the output of sessionInfo() and 
traceback(), and 3) to post a complete code example.


You received this message because you are subscribed to the Google Groups 
"aroma.affymetrix" group with website http://www.aroma-project.org/.
To post to this group, send email to aroma-affymetrix@googlegroups.com
To unsubscribe and other options, go to http://www.aroma-project.org/forum/

--- 
You received this message because you are subscribed to the Google Groups 
"aroma.affymetrix" group.
To unsubscribe from this group and stop receiving emails from it, send an email 
to aroma-affymetrix+unsubscr...@googlegroups.com.
For more options, visit https://groups.google.com/d/optout.

Reply via email to