Thanks for getting back to me, Tim Thats just fine. I knew i was asking for too much. Have a good day.
Gowtham ________________________________________ From: Tim Carver [...@sanger.ac.uk] Sent: Friday, November 12, 2010 12:56 AM To: Gowthaman Ramasamy Cc: artemis-users@sanger.ac.uk Subject: Re: [Artemis-users] Command line options to load BAM files and zoom to a gene Hi Gowtham Great to hear it is working well. Unfortunately there isn't a way of (at the moment) configuring it to that extent. Regards Tim On 11/12/10 12:11 AM, "Gowthaman Ramasamy" <gowthaman.ramas...@seattlebiomed.org> wrote: > Hi Tim, > This works like a charm. But, that makes me want more. Sorry about that. > > - Is there a way we can set the default bam view option to "Coverage Plot > colors" ? So that we see pile up of reads. Or via command line option? > I know i'm asking for too much here........ > > Thanks very much, > Gowtham > > > >> >>> ./art -Doffset=12500 -Dbam=/path/file.bam ~/foo.embl + ~/foo.gff >> >> This is excellent! >> >> Will we be able to do the same for .userplot files soon? >> >> eg >> % ./art -Doffset=12500 -Dbam=/path/file.bam -Dplot=foo.userplot >> ~/foo.embl + ~/foo.gff >> OR >> % ./art -Doffset=12500 -Dbam=/path/file.bam ~/foo.embl + ~/foo.gff @ >> ~/foo.userplot >> >> -- >> --Torsten Seemann >> --Victorian Bioinformatics Consortium, Dept. Microbiology, Monash >> University, AUSTRALIA >> > > > -- > The Wellcome Trust Sanger Institute is operated by Genome Research > Limited, a charity registered in England with number 1021457 and a > company registered in England with number 2742969, whose registered > office is 215 Euston Road, London, NW1 2BE. -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. _______________________________________________ Artemis-users mailing list Artemis-users@sanger.ac.uk http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
