For all interested. We have written some wrappers to run most of the MUMmer suite functionality using the galaxy workflow system; It includes a script to convert the MUMmer comparison file into an Artemis Comparison Tool (ACT) compatible format (~BLAST crunch).
The wrappers can be found in the galaxy toolshed (under sequence analysis) http://community.g2.bx.psu.edu/tool/ More information on galaxy is here: http://galaxy.psu.edu/ The suite is currently NOT usable/available in the usegalaxy.org instance and needs to be plugged in a local instance (easy to do and set up). Maybe if enough people are interested we can convince the galaxy team to plug them into the main public release as well. Please let us know it that is useful and/or if there are any bugs to be fixed or improvements to be made. Happy BioComputing.....Enjoy! Alex
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