Hi Shawn
> 1) Whenever a value other than "0" or "." is entered in column 8 (holds > "phase" data for CDS features), the feature does not display in the proper > reading frame. This only appears to affect the visuals..the feature > information appears correct. Editing the visual to produce the correct > picture in the correct frame causes the coding region to shift incorrectly. > Basically, if the visual is correct, the feature info is wrong, and visa > versa. I have not used Maker, but if you open the CDS feature to edit (Edit->Selected Features in Editor) Artemis provides a codon_start (values 1,2 or 3) which can be used to define the frame the CDS appears in. > > 2) When I save/edit the gff3 (i.e. create or edit features) in Artemis, the > file does not re-open properly--the gene models are lost. In addition, once > edited, the gff3 cannot be opened in Apollo either. When you select File->Save As->GFF format there is an option in the save dialog to flatten the gene model. Try unselecting that. Regards Tim _______________________________________________ Artemis-users mailing list Artemis-users@sanger.ac.uk http://lists.sanger.ac.uk/mailman/listinfo/artemis-users
