Re: [base] MAGE-ML import/export to BASE2

[Gildas Le Corguillé]

I'm worry about spamming this list with my questions :P

But, I found something on the Tab2Mage_exporter "web page" 
(http://www.ebi.ac.uk/~oyeniran/) :

Pooling-Notes.doc 30/10/2007 :
>"Pooling Implementation
>--------------------------------
>The tab2mage importer runs in a pooled or non- pooled state.
>A pooling protocol must be specified for experiments that involve 
pooling, otherwise the importer would run in a non-pool state."

Is anybody know where I can attach a pooling protocol in base2 ? At 
which item ?

Thanks

G.

Le 02/02/2010 11:16, Nicklas Nordborg a écrit :
On 2010-02-02 11:00, Gildas Le Corguillé wrote:
   
Hello,

I want to revive an old base-users thread about MAGE-ML export (or MAGE-Tab).

If we consider that I have gathering and import all my data in base2.
Now I will need to export them in order to submit our arrays to ArrayExpress 
and/or GEO.

I already test Tab2Mage_exporter but there is a problem with the pooling of 
Labaled Extract or Extract.

Are there other methods to generate submission files from Base2 to ArrayExpress 
or GEO ?
I searched on the forum but it seems that it's still in debate.
     
As far as I know there is no other tool or plug-in that exports
experimental data. Unfortunately the Tab2Mage exporter is not maintained
anymore. But the code is available in our subversion repository and if
someone is willing to start fixing it I am sure something can be arranged.

/Nicklas

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