This was fixed in BASE 2.16.1 (http://base.thep.lu.se/ticket/1553). I suggest that you upgrade.
On the other hand... the Tab2Mage plug-in may require that you specify labeled extracts, extracts, samples and biosources or it may not work. /Nicklas On 2011-06-10 08:17, Irina 264 wrote: > Dear team, > > I am working on ‘Tab2Mage exporter’ plugin. I created Agilent experiment > and Validate it with following message: > > > java.lang.NullPointerException on page > /base2/common/overview/index.jsp > > *Version* > > > > BASE 2.16.0 (build #5472; schema #88) > > *Web server* > > > > Apache Tomcat/6.0.29 > > *Database Server* > > > > MySQL 5.0.77 > > *Database Dialect* > > > > org.hibernate.dialect.MySQLInnoDBDialect > > *JDBC Driver* > > > > com.mysql.jdbc.Driver (version 5.1) > > *Java runtime* > > > > OpenJDK Runtime Environment (1.6.0_17-b17), Sun Microsystems Inc. > <http://java.sun.com/> > > *Operating system* > > > > Linux amd64 2.6.18-194.17.4.el5 > > *Memory* > > > > Total: 924.8 MB > Free: 607.6 MB > Max: 1.8 GB > > *Browser* > > > > Mozilla/4.0 (compatible; MSIE 7.0; Windows NT 5.1; Trident/4.0; .NET CLR > 1.1.4322; .NET CLR 2.0.50727; .NET CLR 3.0.4506.2152; .NET CLR > 3.5.30729; InfoPath.2; .NET4.0C) > > *Error message* > > > > *Stack trace* > > > > > Version BASE 2.16.0 (build #5472; schema #88) > Web server Apache Tomcat/6.0.29 > Database Server MySQL 5.0.77 > Database Dialect org.hibernate.dialect.MySQLInnoDBDialect > JDBC Driver com.mysql.jdbc.Driver (version 5.1) > Java runtime OpenJDK Runtime Environment (1.6.0_17-b17), Sun > Microsystems Inc. <http://java.sun.com/> > Operating system Linux amd64 2.6.18-194.17.4.el5 > Memory Total: 924.8 MB > Free: 607.6 MB > Max: 1.8 GB > Browser Mozilla/4.0 (compatible; MSIE 7.0; Windows NT 5.1; Trident/4.0; > .NET CLR 1.1.4322; .NET CLR 2.0.50727; .NET CLR 3.0.4506.2152; .NET CLR > 3.5.30729; InfoPath.2; .NET4.0C) > Error message > Stack trace > > > Version BASE 2.16.0 (build #5472; schema #88) > Web server Apache Tomcat/6.0.29 > Database Server MySQL 5.0.77 > Database Dialect org.hibernate.dialect.MySQLInnoDBDialect > JDBC Driver com.mysql.jdbc.Driver (version 5.1) > Java runtime OpenJDK Runtime Environment (1.6.0_17-b17), Sun > Microsystems Inc. <http://java.sun.com/> > Operating system Linux amd64 2.6.18-194.17.4.el5 > Memory Total: 924.8 MB > Free: 607.6 MB > Max: 1.8 GB > Browser Mozilla/4.0 (compatible; MSIE 7.0; Windows NT 5.1; Trident/4.0; > .NET CLR 1.1.4322; .NET CLR 2.0.50727; .NET CLR 3.0.4506.2152; .NET CLR > 3.5.30729; InfoPath.2; .NET4.0C) > Error message > Stack trace > > > Version BASE 2.16.0 (build #5472; schema #88) > Web server Apache Tomcat/6.0.29 > Database Server MySQL 5.0.77 > Database Dialect org.hibernate.dialect.MySQLInnoDBDialect > JDBC Driver com.mysql.jdbc.Driver (version 5.1) > Java runtime OpenJDK Runtime Environment (1.6.0_17-b17), Sun > Microsystems Inc. <http://java.sun.com/> > Operating system Linux amd64 2.6.18-194.17.4.el5 > Memory Total: 924.8 MB > Free: 607.6 MB > Max: 1.8 GB > Browser Mozilla/4.0 (compatible; MSIE 7.0; Windows NT 5.1; Trident/4.0; > .NET CLR 1.1.4322; .NET CLR 2.0.50727; .NET CLR 3.0.4506.2152; .NET CLR > 3.5.30729; InfoPath.2; .NET4.0C) > Error message > Stack trace > > > java.lang.NullPointerException > ...at > net.sf.basedb.util.overview.validator.LabeledExtractValidator.postValidateFolder(LabeledExtractValidator.java:122) > ...at > net.sf.basedb.util.overview.node.NodeFactory.postValidateFolder(NodeFactory.java:224) > ...at > net.sf.basedb.util.overview.loader.BasicItemNodeLoader.postValidateFolder(BasicItemNodeLoader.java:134) > ...at > net.sf.basedb.util.overview.loader.LabeledExtractLoader.createReverseNode(LabeledExtractLoader.java:230) > ...at > net.sf.basedb.util.overview.loader.LabeledExtractLoader.createReverseNode(LabeledExtractLoader.java:104) > ...at > net.sf.basedb.util.overview.loader.AutoChildNodeLoader.createReverseNode(AutoChildNodeLoader.java:95) > ...at > net.sf.basedb.util.overview.loader.HybridizationLoader.loadReverseChildNodes(HybridizationLoader.java:187) > ...at > net.sf.basedb.util.overview.loader.AbstractNodeLoader.loadChildNodesOfItemNode(AbstractNodeLoader.java:126) > > ...at > net.sf.basedb.util.overview.loader.AbstractNodeLoader.loadChildNodes(AbstractNodeLoader.java:112) > ...at > net.sf.basedb.util.overview.loader.AutoChildNodeLoader.loadChildNodes(AutoChildNodeLoader.java:121) > ...at > net.sf.basedb.util.overview.loader.AutoChildNodeLoader.createReverseNode(AutoChildNodeLoader.java:96) > ...at > net.sf.basedb.util.overview.loader.ScanLoader.loadReverseChildNodes(ScanLoader.java:171) > ...at > net.sf.basedb.util.overview.loader.AbstractNodeLoader.loadChildNodesOfItemNode(AbstractNodeLoader.java:126) > ...at > net.sf.basedb.util.overview.loader.AbstractNodeLoader.loadChildNodes(AbstractNodeLoader.java:112) > ...at > net.sf.basedb.util.overview.loader.AutoChildNodeLoader.loadChildNodes(AutoChildNodeLoader.java:121) > ...at > net.sf.basedb.util.overview.loader.AutoChildNodeLoader.createReverseNode(AutoChildNodeLoader.java:96) > ...at > net.sf.basedb.util.overview.loader.RawBioAssayLoader.loadReverseChildNodes(RawBioAssayLoader.java:185) > ...at > net.sf.basedb.util.overview.loader.AbstractNodeLoader.loadChildNodesOfItemNode(AbstractNodeLoader.java:126) > ...at > net.sf.basedb.util.overview.loader.AbstractNodeLoader.loadChildNodes(AbstractNodeLoader.java:112) > ...at > net.sf.basedb.util.overview.loader.AbstractNodeLoader.loadChildNodesOfFolderNode(AbstractNodeLoader.java:142) > ...at > net.sf.basedb.util.overview.loader.AbstractNodeLoader.loadChildNodes(AbstractNodeLoader.java:108) > ...at > net.sf.basedb.util.overview.loader.AutoChildNodeLoader.loadChildNodes(AutoChildNodeLoader.java:121) > ...at > net.sf.basedb.util.overview.loader.AutoChildNodeLoader.createReverseNode(AutoChildNodeLoader.java:96) > ...at > net.sf.basedb.util.overview.loader.ExperimentLoader.loadReverseChildNodes(ExperimentLoader.java:109) > ...at > net.sf.basedb.util.overview.loader.AbstractNodeLoader.loadChildNodesOfItemNode(AbstractNodeLoader.java:126) > ...at > net.sf.basedb.util.overview.loader.AbstractNodeLoader.loadChildNodes(AbstractNodeLoader.java:112) > ...at > net.sf.basedb.util.overview.loader.AutoChildNodeLoader.loadChildNodes(AutoChildNodeLoader.java:121) > ...at > net.sf.basedb.util.overview.GenericOverview.expand(GenericOverview.java:296) > ...at org.apache.jsp.common.overview.index_jsp._jspService(index_jsp.java:115) > ...at org.apache.jasper.runtime.HttpJspBase.service(HttpJspBase.java:70) > ...at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) > ...at > org.apache.jasper.servlet.JspServletWrapper.service(JspServletWrapper.java:377) > ...at org.apache.jasper.servlet.JspServlet.serviceJspFile(JspServlet.java:313) > ...at org.apache.jasper.servlet.JspServlet.service(JspServlet.java:260) > ...at javax.servlet.http.HttpServlet.service(HttpServlet.java:717) > ...at > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290) > ...at > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) > ...at > net.sf.basedb.clients.web.servlet.CharacterEncodingFilter.doFilter(CharacterEncodingFilter.java:69) > ...at > org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:235) > ...at > org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206) > ...at > org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233) > ...at > org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191) > ...at > org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127) > ...at > org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102) > ...at > org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109) > ...at > org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:298) > ...at org.apache.jk.server.JkCoyoteHandler.invoke(JkCoyoteHandler.java:190) > ...at org.apache.jk.common.HandlerRequest.invoke(HandlerRequest.java:291) > ...at org.apache.jk.common.ChannelSocket.invoke(ChannelSocket.java:774) > ...at > org.apache.jk.common.ChannelSocket.processConnection(ChannelSocket.java:703) > ...at > org.apache.jk.common.ChannelSocket$SocketConnection.runIt(ChannelSocket.java:896) > ...at > org.apache.tomcat.util.threads.ThreadPool$ControlRunnable.run(ThreadPool.java:690) > ...at java.lang.Thread.run(Thread.java:636) > > Could you tell me what I done wrong or missed in Experiment? (I don't > need any Labels) > > Regards, > > Irina > > > > ------------------------------------------------------------------------------ > EditLive Enterprise is the world's most technically advanced content > authoring tool. Experience the power of Track Changes, Inline Image > Editing and ensure content is compliant with Accessibility Checking. > http://p.sf.net/sfu/ephox-dev2dev > > > > _______________________________________________ > The BASE general discussion mailing list > basedb-users@lists.sourceforge.net > unsubscribe: send a mail with subject "unsubscribe" to > basedb-users-requ...@lists.sourceforge.net ------------------------------------------------------------------------------ EditLive Enterprise is the world's most technically advanced content authoring tool. Experience the power of Track Changes, Inline Image Editing and ensure content is compliant with Accessibility Checking. http://p.sf.net/sfu/ephox-dev2dev _______________________________________________ The BASE general discussion mailing list basedb-users@lists.sourceforge.net unsubscribe: send a mail with subject "unsubscribe" to basedb-users-requ...@lists.sourceforge.net
