Rotem Sertchook
Mon, 08 Feb 2010 23:44:06 -0800
You can build any 3D molecule easily in Discovery Studio Visualizer - It is free but not for Mac OS
there is nice server called Frog, that convert 2D to 3D and can build set of conformers http://bioserv.rpbs.jussieu.fr/cgi-bin/Frog2 Corina is another server that do simple 2D to 3D conversion http:// www.molecular-networks.com/online_demos/corina_demo and you have the PRODRG server http://davapc1.bioch.dundee.ac.uk/ prodrg/ that can convert 2D to 3D and in addition can create topology file in many formats (e.g GROMACS, CNS...). PRODRG support only common atom types (N, C, O, S, P, Cl, I, Br, F)
Rotem ----------------------------------------------------- Rotem Sertchook, Ph.D. Bioinformatics Unit, Biological Services Weizmann Institute of Science, Rehovot 76100, Israel. -----------------------------------------------------