Hi Ed, your suggestion makes perfect sense to me, and it's trivial to add an option to do what you want. This will be available in next Phenix nightly build (clearly not tomorrow given today's power outage).
Command line: use "write_map_coefficients_only=True" (by default is is False). Refinement GUI: Configure -> Output -> Other options -> tick "Write map coefficients only" box. Pavel On Wed, Aug 2, 2017 at 1:12 PM, Edwin Pozharski <pozharsk...@gmail.com> wrote: > > Just to clarify, how do you use the extra columns in this scenario? My > suggestion was to have the output file that includes only the map > coefficient columns, so you still can look at the map. IIRC, FP/SIGFP > columns from refmac output are actually modified from the input (scaled > with Boverall), so it was not recommended to use refmac output as input of > any kind. > > Also, to provide context, my comment resulted from dealing with a large > chunk of data that included ~200 output mtz files - which is Gb-sized > tarball that had to be uploaded/downloaded. Not the end of the world, but > cutting it in half seemed like a good idea at the time. :) Not hard to > script that, of course. > > I am not necessarily advocating for skinny files to be the default, but as > it stands, refmac/buster/phenix do not even provide the option of doing it > (It's entirely possible that I am wrong here on specifics and will get > corrected by Garib, Gerard and Pavel). > > Cheers, > > Ed. > > Edwin Pozharski, PhD, Assistant Professor > University of Maryland, Baltimore > ---------------------------------------------- > When the Way is forgotten duty and justice appear; > Then knowledge and wisdom are born along with hypocrisy. > When harmonious relationships dissolve then respect and devotion arise; > When a nation falls to chaos then loyalty and patriotism are born. > ------------------------------ / Lao Tse / > >
