Dear Coot’ers I have recently been using coot very successfully to build into a map, however it has just started crashing every time I click on baton build. Skeletonisation works fine, as do other modelling tools in the same menu. I tried starting the session in different ways, eg. from scratch rather than from a saved state, but I get the same problem. I also tried centring on different parts of the model before clicking baton building, but always the same crash.
Is it a coincidence that I just upgraded to ccp4i v7? I’m launching coot from the terminal window, not from within ccp4i… and I’m using coot v 0.8.7 I copy below the info in the terminal window, in case that’s of use. I’d be very grateful if anyone can give advice on how I can move forward with my model building again! All the best, Cara. skeletonization toplevel: 1317 skeletonization toplevel: 1317 INFO:: Creating a molecule for Baton Atoms INFO:: setting spacegroup of Baton Atoms to be: P 1 INFO:: setting cell of Baton Atoms to be: Cell ( 212, 212, 212, 90, 90, 90) Symmetry available for this molecule INFO:: returning baton atom molecule 7 -- baton_next_ca_options 9e-14 xyz = ( 122.9, 103.4, 96.86) 9e-14 xyz = ( 123, 101.8, 96.3) 9e-14 xyz = ( 122.8, 102.6, 96.33) 9e-14 xyz = ( 123, 102.7, 97.09) 9e-14 xyz = ( 127.6, 101.5, 92.4) 9e-14 xyz = ( 127.7, 101.2, 92.59) 9e-14 xyz = ( 127.6, 102.1, 92.2) 9e-14 xyz = ( 128.2, 100.9, 93.05) 9e-14 xyz = ( 128.3, 101.4, 92.81) 9e-15 xyz = ( 123.2, 102.1, 94.28) 9e-15 xyz = ( 123.3, 101.2, 96.25) 9e-15 xyz = ( 122.9, 104.1, 96.2) 9e-15 xyz = ( 127, 102.7, 91.94) 9e-15 xyz = ( 123.2, 103.4, 97.41) 9e-15 xyz = ( 122.8, 102.7, 95.52) 9e-15 xyz = ( 128.1, 101.6, 92.56) 9e-16 xyz = ( 123, 102.1, 94.87) -- Creating a molecule for Baton Atom Guide Points !! Warning:: No symmetry available for this molecule No Symmetry for this model INFO:: backup file coot-backup/Baton_Atom_Guide_Points_Thu_Mar__9_22:30:02_2017_modification_0.pdb.gz /Applications/ccp4-7.0/bin/coot: line 284: 41788 Segmentation fault: 11 $coot_bin "$@" coot-exe: "/Applications/ccp4-7.0/libexec/coot-bin" coot-version: /Applications/ccp4-7.0/libexec/coot-bin platform: /usr/bin/uname core: #f No core file found. No debugging
