Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/sci
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv13770
Added Files:
staden.info staden.patch
Log Message:
new pkg staden 2.0.0b9
--- NEW FILE: staden.info ---
Package: staden
Version: 2.0.0
Revision: 0.b9.1
Description: DNA sequence assembly and analysis tools
License: BSD
### Free to update and take over (take libstaden if you take this)
Maintainer: Hanspeter Niederstrasser <nie...@users.sourceforge.net>
Depends: <<
bzip2-shlibs,
fontconfig2-shlibs (>= 2.10.2-1),
freetype219-shlibs (>= 2.4.11-1),
libcurl4-shlibs,
liblzma5-shlibs,
libncurses5-shlibs,
libpng16-shlibs,
libstaden-read1-shlibs,
tcltk-shlibs,
tklib,
x11-shlibs,
xft2-shlibs
<<
BuildDepends: <<
bzip2-dev,
fink (>= 0.32),
fink-package-precedence,
fontconfig2-dev (>= 2.10.2-1),
freetype219 (>= 2.4.11-1),
itk-dev,
libcurl4,
liblzma5,
libncurses5,
libpng16,
libstaden-read1-dev,
tcltk-dev,
x11-dev,
xft2-dev
<<
RuntimeDepends: <<
itcl,
itk,
iwidgets
<<
Suggests: staden-doc
Source: mirror:sourceforge:%n/%n/%vb9/%n-%vb9-src.tar.gz
Source-MD5: 94dc304b00d18b95f783136c9ffd934f
Source-Checksum: SHA1(7016de7bc1ab5cb0a07fe7449aa9d2d280d677b8)
GCC: 4.0
PatchFile: %n.patch
PatchFile-MD5: cfe21387b40641a11c601d7a18c35095
SetCFLAGS: -MD
UseMaxBuildJobs: false
ConfigureParams: <<
--with-tcl=%p/lib \
--with-tk=%p/lib \
--with-io_lib=%p \
--with-tklib=%p/lib/tklib0.5 \
--with-iwidgets=%p/lib \
--with-itcl=%p/lib \
--with-itk=%p/lib
<<
CompileScript: <<
./configure %c
## need to provide the install_names for the private dylibs
perl -pi -e 's|-compatibility_version|-install_name
\$\{LIB_RUNTIME_DIR\}/\$\{SHLIB_PREFIX\}\$\{LIBS\}\$\{SHLIB_SUFFIX\} $&|g'
system.mk
make -w
fink-package-precedence --depfile-ext='\.d' .
<<
InstallScript: <<
make install DESTDIR=%d
<<
DocFiles: ChangeLog NEWS
Shlibs: <<
!%p/lib/staden/libcopy_reads.dylib
!%p/lib/staden/libg.dylib
!%p/lib/staden/libgap.dylib
!%p/lib/staden/libgap5.dylib
!%p/lib/staden/libhaplo.dylib
!%p/lib/staden/libmisc.dylib
!%p/lib/staden/libmutlib.dylib
!%p/lib/staden/libprefinish.dylib
!%p/lib/staden/libprimer3.dylib
!%p/lib/staden/libseq_utils.dylib
!%p/lib/staden/libspin.dylib
!%p/lib/staden/libtext_utils.dylib
!%p/lib/staden/libtk_utils.dylib
<<
Homepage: http://staden.sourceforge.net/
DescDetail: <<
A fully developed set of DNA sequence assembly (Gap4 and Gap5),
editing and analysis tools (Spin)
Staden R. The Staden sequence analysis package. Molecular biotechnology.
1996;5(3):233-41. Epub 1996/06/01. PubMed PMID: 8837029.
<<
DescPackaging: <<
Patch to use libpng > libpng14 from SVN r2857
<<
--- NEW FILE: staden.patch ---
--- a/tk_utils/tkTrace.c
+++ b/tk_utils/tkTrace.c
@@ -2123,7 +2123,7 @@
goto error;
/* PNG requires setjmp/longjmp to be used */
- if (setjmp(png_ptr->jmpbuf))
+ if (setjmp(png_jmpbuf(png_ptr)))
goto error;
/* Create the info bits */
------------------------------------------------------------------------------
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