Update of /cvsroot/fink/dists/10.7/stable/main/finkinfo/libs/pythonmods
In directory sfp-cvs-1.v30.ch3.sourceforge.com:/tmp/cvs-serv4098
Modified Files:
biom-format-py.info
Log Message:
biom-format-py 1.2.0
Index: biom-format-py.info
===================================================================
RCS file:
/cvsroot/fink/dists/10.7/stable/main/finkinfo/libs/pythonmods/biom-format-py.info,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- biom-format-py.info 23 Aug 2013 11:41:25 -0000 1.2
+++ biom-format-py.info 14 Oct 2013 20:54:36 -0000 1.3
@@ -1,22 +1,26 @@
Info2: <<
Package: biom-format-py%type_pkg[python]
-Version: 1.1.2
-Revision: 2
+Version: 1.2.0
+Revision: 1
Description: Biological Observation Matrix Format
Type: python (2.7)
License: GPL
Maintainer: Hanspeter Niederstrasser <nie...@users.sourceforge.net>
Depends: <<
numpy-py%type_pkg[python],
+ pyqi-py%type_pkg[python],
python%type_pkg[python]
<<
BuildDepends: <<
cython-py%type_pkg[python],
python%type_pkg[python]
<<
+Suggests: <<
+ dateutil-py%type_pkg[python]
+<<
Source:
ftp://thebeast.colorado.edu/pub/biom-format-releases/biom-format-%v.tar.gz
-Source-MD5: 66c7b9cc8dc199e37f96aa64aaa77d15
-Source-Checksum: SHA1(7ca5039e19bbfeb559bddc45b1ecbd7a3d2eaeea)
+Source-MD5: c376830c5f4b5d4a7aacd5fe0536ab8e
+Source-Checksum: SHA1(f07c9b2c13214eba422f58296b45818eeff5557d)
GCC: 4.0
CompileScript: <<
@@ -26,32 +30,34 @@
TestDepends: <<
<<
TestScript: <<
- PYTHONPATH=`pwd`/python-code:$PYTHONPATH
%p/bin/python%type_raw[python] python-code/tests/all_tests.py || exit 2
+ PYTHONPATH=`pwd`/python-code:$PYTHONPATH
%p/bin/python%type_raw[python] python-code/tests/test_util.py || exit 2
+ PYTHONPATH=`pwd`/python-code:$PYTHONPATH
%p/bin/python%type_raw[python] python-code/tests/test_unit_test.py || exit 2
<<
<<
InstallScript: <<
#!/bin/sh -ev
%p/bin/python%type_raw[python] setup.py install --root %d --prefix %p
- for file in add_metadata biom_validator convert_biom
print_biom_python_config print_biom_table_summary subset_biom
test_biom_validator; do
+ for file in add_metadata biom_validator convert_biom
print_biom_python_config print_biom_table_summary subset_biom; do
mv %i/bin/$file.py %i/bin/$file.py-py%type_pkg[python]
done
+ # biom needs special case
+ mv %i/bin/biom %i/bin/biom-py%type_pkg[python]
<<
-DocFiles: COPYING ChangeLog README.md
+DocFiles: COPYING README.md
PostInstScript: <<
- update-alternatives --install %p/bin/add_metadata.py add_metadata
%p/bin/add_metadata.py-py%type_pkg[python] %type_pkg[python] \
+ update-alternatives --install %p/bin/biom biom
%p/bin/biom-py%type_pkg[python] %type_pkg[python] \
+ --slave %p/bin/add_metadata.py add_metadata
%p/bin/add_metadata.py-py%type_pkg[python] \
--slave %p/bin/biom_validator.py biom_validator
%p/bin/biom_validator.py-py%type_pkg[python] \
--slave %p/bin/convert_biom.py convert_biom
%p/bin/convert_biom.py-py%type_pkg[python] \
--slave %p/bin/print_biom_python_config.py
print_biom_python_config %p/bin/print_biom_python_config.py-py%type_pkg[python]
\
--slave %p/bin/print_biom_table_summary.py
print_biom_table_summary %p/bin/print_biom_table_summary.py-py%type_pkg[python]
\
- --slave %p/bin/subset_biom.py subset_biom
%p/bin/subset_biom.py-py%type_pkg[python] \
- --slave %p/bin/test_biom_validator.py test_biom_validator
%p/bin/test_biom_validator.py-py%type_pkg[python] \
-
+ --slave %p/bin/subset_biom.py subset_biom
%p/bin/subset_biom.py-py%type_pkg[python]
<<
PreRmScript: <<
if [ $1 != "upgrade" ]; then
- update-alternatives --remove add_metadata
%p/bin/add_metadata.py-py%type_pkg[python]
+ update-alternatives --remove biom
%p/bin/biom-py%type_pkg[python]
fi
- <<
+<<
Homepage: http://biom-format.org/
DescDetail: <<
The BIOM file format (canonically pronounced biome) is designed to be a
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