In the script ICAFIX/hcp_fix.for_fix1.06a, it uses the modified version of
melodic:

Debug "Modified version of melodic in use"
Debug "melodic located at: ${HOME}/pipeline_tools/fix1.06a/melodic used"
Debug "instead of melodic located at: ${FSLDIR}/bin/melodic"
Debug "Beginning of melodic version log"
if [ "${DEBUG}" = "TRUE" ] ; then
${HOME}/pipeline_tools/fix1.06a/melodic --version
fi
Debug "End of melodic version log"

# "old" melodic command
#$FSLDIR/bin/melodic -i $fmri -o ${fmri}.ica/filtered_func_data.ica -d -250
--nobet --report --Oall --tr=$tr
#

${HOME}/pipeline_tools/fix1.06a/melodic -i $fmri -o
${fmri}.ica/filtered_func_data.ica -d -250 --nobet --report --Oall --tr=$tr

-------------------------------
Or should I be using the old melodic?

On Wed, Jul 19, 2017 at 5:05 PM, Glasser, Matthew <glass...@wustl.edu>
wrote:

> What is this in reference to?
>
> Peace,
>
> Matt.
>
> From: <hcp-users-boun...@humanconnectome.org> on behalf of Yeun Kim <
> yeun...@gmail.com>
> Date: Wednesday, July 19, 2017 at 7:04 PM
> To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org>
> Subject: [HCP-Users] hcp_fix.for_fix1.06a
>
> Hi,
>
> I cannot find the modified version of melodic in
> http://www.fmrib.ox.ac.uk/~steve/ftp/fix.tar.gz.
>
> Where is the modified melodic?
>
> Thank you,
> Yeun
>
> _______________________________________________
> HCP-Users mailing list
> HCP-Users@humanconnectome.org
> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>

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