I’m trying to diagnose scripts written a few years ago that are no longer working in the latest version of JSmol. The same scripts work correctly in an older version of JSmol: ver. 14.2.4 (2014-08-03). After updating JSmol, there is no error in the JSmol console, just a blank JSmol canvas (no atoms appear).
I suspect that it’s syntax related to ‘select’? because nothing is being selected for color or style, but not sure. Here are a few excerpts: (I’ll just include an example of each type of call). Does any of this look problematic or need fixes? I can post the full scripts if helpful. model 1 rotate z -108 rotate y 130 rotate z 32 zoom 100 restrict not :a and not solvent select 147-157 and :a define switch1a selected select switch1a or switch2a or switch3a define allswitcha selected select :i and (177,179,181,192,198,199,200,202,205,211) #numbers are less by 1 than those in the Nature 379 article define ihb selected #alpha subunit residues hbonding with beta elect (switch1b and backbone) and not (173-176) #these sw1b residues interact w/beta select selected or (177,179,181) and :i define subset1b selected select :a and (172,173,174,176,179,185) or (switch2a and backbone) define subset2a selected select :a color [xFFAD00] #orange select gtp color [x00C000] #guanine green select gdp color [xFF0000] select :i or :b or :g or :d spacefill on select atomno=644 and :i label "\u03b1" ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot _______________________________________________ Jmol-developers mailing list Jmol-developers@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-developers