Hi Max Have you explored the "connect" command?
>From your last description, I think that might do what you want. It's easy to select atom pairs by distance, and then you could "reconnect" them and apply color and thickness of bond https://chemapps.stolaf.edu/jmol/docs/#connect · Dr. Angel Herráez Biochemistry and Molecular Biology, Dept. of Systems Biology, University of Alcalá E-28871 Alcalá de Henares (Madrid), Spain ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, SlashDot.org! http://sdm.link/slashdot _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users