Pshemak,
The CAP part is discussed here:
https://chemapps.stolaf.edu/jmol/docs/index.htm?&fullmanual=1&ver=14.6#isosurface
<https://chemapps.stolaf.edu/jmol/docs/index.htm?&fullmanual=1&ver=14.6#isosurface>
Scroll down until you see CAP listing.
The spacefill 1% is just hiding the atoms leaving the lcaocartoons
Dean, the main reason I'm jumping in here is the display unitcell command. Is
that a legal Jmol Script command? After loading a CIF file, I thought that you
had to do something like this to get the unit cell:
save orientation; load "" {444 666 1}; set displayCellParameters false;restore
orientation; unitcell on; display cell=555; center visible; zoom 200;
Otis
--
Otis Rothenberger
o...@chemagic.org
http://chemagic.org
> On Apr 10, 2017, at 11:44 AM, Pshemak Maslak <p...@chem.psu.edu> wrote:
>
> Thank you Dean,
>
> I do not understand the
>
> lcaocartoon scale 1.0 CAP unitcell 'cpk'; spacefill 1%;
>
> part of the command. Is it documented in
> https://chemapps.stolaf.edu/jmol/docs/
> <https://chemapps.stolaf.edu/jmol/docs/> ?
>
> Thanks,
>
> PM
>
>
> On 4/10/2017 10:46 AM, Dean Johnston wrote:
>> Yes - I have an example at: http://crystals.otterbein.edu/packing/index.html
>> <http://crystals.otterbein.edu/packing/index.html>
>>
>> Pick structure from the left menu and then click the “Show Contents of One
>> Unit Cell”. Works beautifully!
>>
>> The commands are:
>> display unitcell; spacefill ionic 100%; lcaocartoon scale 1.0 CAP unitcell
>> 'cpk'; spacefill 1%;
>>
>> Dean Johnston
>>
>> On April 10, 2017 at 9:00:03 AM, Pshemak Maslak (p...@chem.psu.edu
>> <mailto:p...@chem.psu.edu>) wrote:
>>
>>>
>>> Can the "slab" command be used to produce presentations equivalent to the
>>> image linked below?
>>>
>>> https://en.wikipedia.org/wiki/Atomic_packing_factor#/media/File:CCC_crystal_cell_(opaque).svg
>>>
>>> <https://en.wikipedia.org/wiki/Atomic_packing_factor#/media/File:CCC_crystal_cell_%28opaque%29.svg>
>>>
>>> If so, any suggestions on how to do that would be appreciated.
>>>
>>> Thanks,
>>>
>>> PM
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