Messages by Date
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2014/06/10
Re: [R-sig-phylo] How to use which.edge {ape}
Gilles Benjamin Leduc
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2014/06/10
Re: [R-sig-phylo] autocorrelation nodes in phylogeny
Renske Onstein
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2014/06/10
Re: [R-sig-phylo] edge color in phylomorphospace3d
Jonas Eberle
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2014/06/09
Re: [R-sig-phylo] autocorrelation nodes in phylogeny
Dan Rabosky
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2014/06/09
Re: [R-sig-phylo] Triploid microsatellites?
Vojtěch Zeisek
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2014/06/09
Re: [R-sig-phylo] autocorrelation nodes in phylogeny
Dan Rabosky
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2014/06/09
[R-sig-phylo] autocorrelation nodes in phylogeny
Renske Onstein
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2014/06/09
Re: [R-sig-phylo] Triploid microsatellites?
Vojtěch Zeisek
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2014/06/09
Re: [R-sig-phylo] Triploid microsatellites?
Vojtěch Zeisek
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2014/06/08
[R-sig-phylo] edge color in phylomorphospace3d
Paolo Piras
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2014/06/07
[R-sig-phylo] problem with raxml (phyloch)
john d
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2014/06/05
Re: [R-sig-phylo] How to use which.edge {ape}
Gilles Benjamin Leduc
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2014/06/04
Re: [R-sig-phylo] How to use which.edge {ape}
Liam J. Revell
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2014/06/04
Re: [R-sig-phylo] Phytools rerootingMethod(): error in 'colnames, -'
Liam J. Revell
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2014/06/04
[R-sig-phylo] How to use which.edge {ape}
Gilles Benjamin Leduc
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2014/06/04
[R-sig-phylo] Phytools rerootingMethod(): error in 'colnames,-'
Brown, Jonathan
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2014/06/03
Re: [R-sig-phylo] (no subject)
catherine reeb
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2014/06/03
[R-sig-phylo] Functional diversity controlling for phylogenetic relatedness
Kaspar Delhey
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2014/06/03
Re: [R-sig-phylo] Early burst branch rescale
Julien Clavel
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2014/06/03
Re: [R-sig-phylo] (no subject)
catherine reeb
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2014/06/03
Re: [R-sig-phylo] (no subject)
Klaus Schliep
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2014/06/03
Re: [R-sig-phylo] (no subject)
catherine reeb
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2014/06/03
[R-sig-phylo] (no subject)
catherine reeb
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2014/06/02
Re: [R-sig-phylo] Early burst branch rescale
David Bapst
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2014/06/02
Re: [R-sig-phylo] Early burst branch rescale
Julien Clavel
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2014/06/02
Re: [R-sig-phylo] Early burst branch rescale
Slater, Graham
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2014/06/02
[R-sig-phylo] Early burst branch rescale
Jonathan Mitchell
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2014/06/02
Re: [R-sig-phylo] Triploid microsatellites?
Jombart, Thibaut
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2014/06/02
Re: [R-sig-phylo] Triploid microsatellites?
Vojtěch Zeisek
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2014/06/02
Re: [R-sig-phylo] Triploid microsatellites?
Vojtěch Zeisek
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2014/06/01
Re: [R-sig-phylo] incorrect tip labels with tiplabels() function
Liam J. Revell
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2014/06/01
[R-sig-phylo] incorrect tip labels with tiplabels() function
Jonathan Drury
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2014/06/01
[R-sig-phylo] geomorph 2.1
Adams, Dean [EEOBS]
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2014/05/30
Re: [R-sig-phylo] Exponential function on make.bd.t
Gustavo Burin Ferreira
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2014/05/30
Re: [R-sig-phylo] Triploid microsatellites?
Niklaus Grunwald
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2014/05/30
Re: [R-sig-phylo] Triploid microsatellites?
Gilles Benjamin Leduc
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2014/05/30
Re: [R-sig-phylo] Triploid microsatellites?
Jombart, Thibaut
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2014/05/30
Re: [R-sig-phylo] trait simulation function (Krzysztof Bartoszek)
krzysztofbartoszek
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2014/05/30
Re: [R-sig-phylo] Triploid microsatellites?
Emmanuel Paradis
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2014/05/30
Re: [R-sig-phylo] Triploid microsatellites?
Vojtěch Zeisek
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2014/05/30
Re: [R-sig-phylo] Exponential function on make.bd.t
Rich FitzJohn
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2014/05/29
Re: [R-sig-phylo] Triploid microsatellites?
Jombart, Thibaut
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2014/05/29
[R-sig-phylo] Exponential function on make.bd.t
Gustavo Burin Ferreira
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2014/05/29
Re: [R-sig-phylo] Triploid microsatellites?
Gilles Benjamin Leduc
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2014/05/29
[R-sig-phylo] Triploid microsatellites?
Vojtěch Zeisek
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2014/05/29
Re: [R-sig-phylo] cophyloplot: how to marks links differently
Juan Antonio Balbuena
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2014/05/28
Re: [R-sig-phylo] trait simulation function
Liam J. Revell
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2014/05/28
[R-sig-phylo] trait simulation function
Gabriela Decker
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2014/05/28
Re: [R-sig-phylo] cophyloplot: how to marks links differently
Emmanuel Paradis
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2014/05/27
Re: [R-sig-phylo] Installing diversitree on OS X Mavericks, R 3.1.0
Gustavo Burin Ferreira
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2014/05/27
Re: [R-sig-phylo] Installing diversitree on OS X Mavericks, R 3.1.0
Jonathan Chang
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2014/05/27
Re: [R-sig-phylo] Installing diversitree on OS X Mavericks, R 3.1.0
Jonathan Chang
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2014/05/27
Re: [R-sig-phylo] Installing diversitree on OS X Mavericks, R 3.1.0
Gustavo Burin Ferreira
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2014/05/27
[R-sig-phylo] Installing diversitree on OS X Mavericks, R 3.1.0
Jonathan Chang
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2014/05/27
[R-sig-phylo] cophyloplot: how to marks links differently
Juan Antonio Balbuena
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2014/05/23
Re: [R-sig-phylo] Transition matrix for ace in ape
Hilmar Lapp
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2014/05/23
Re: [R-sig-phylo] Transition matrix for ace in ape
Rosemary McCloskey
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2014/05/23
[R-sig-phylo] Transition matrix for ace in ape
Rosemary McCloskey
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2014/05/22
Re: [R-sig-phylo] drop.tip in ape using trim.internal=FALSE
Matthew Nelsen
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2014/05/22
[R-sig-phylo] drop.tip in ape using trim.internal=FALSE
Matthew Nelsen
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2014/05/22
[R-sig-phylo] starting.point.bisse mu=0
Frenzke
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2014/05/21
Re: [R-sig-phylo] Distances from nods to the root.
Emmanuel Paradis
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2014/05/20
Re: [R-sig-phylo] Distances from nods to the root.
Liam J. Revell
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2014/05/20
Re: [R-sig-phylo] Distances from nods to the root.
François Michonneau
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2014/05/20
[R-sig-phylo] Distances from nods to the root.
Alexey Fomin
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2014/05/18
Re: [R-sig-phylo] plot trees after different branch transformations
Agus Camacho
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2014/05/16
Re: [R-sig-phylo] plot trees after different branch transformations
Agus Camacho
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2014/05/16
Re: [R-sig-phylo] Cross-validation with independent contrasts
Diego Bilski
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2014/05/16
Re: [R-sig-phylo] plot trees after different branch transformations
Luke Harmon
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2014/05/16
Re: [R-sig-phylo] plot trees after different branch transformations
Liam J. Revell
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2014/05/16
[R-sig-phylo] plot trees after different branch transformations
Agus Camacho
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2014/05/16
Re: [R-sig-phylo] Cross-validation with independent contrasts
Joe Felsenstein
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2014/05/16
Re: [R-sig-phylo] Concentrated changes test
Theodore Garland Jr
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2014/05/16
[R-sig-phylo] Concentrated changes test
Matt Pennell
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2014/05/16
Re: [R-sig-phylo] Cross-validation with independent contrasts
Theodore Garland Jr
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2014/05/16
[R-sig-phylo] Cross-validation with independent contrasts
Diego Bilski
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2014/05/15
Re: [R-sig-phylo] edge colors in ape's plot.phylo
Liam J. Revell
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2014/05/15
[R-sig-phylo] edge colors in ape's plot.phylo
Rosemary McCloskey
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2014/05/15
[R-sig-phylo] Noob Questions
Matt Curcio
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2014/05/14
Re: [R-sig-phylo] plot bars across tips of a circular phylogeny
Liam J. Revell
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2014/05/14
Re: [R-sig-phylo] plot bars across tips of a circular phylogeny
Emmanuel Paradis
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2014/05/14
Re: [R-sig-phylo] plot bars across tips of a circular phylogeny
Liam J. Revell
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2014/05/14
[R-sig-phylo] plot bars across tips of a circular phylogeny
Matthew Helmus
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2014/05/14
[R-sig-phylo] Conference on Modern Phylogenetic Comparative Methods and their Application in Evolutionary Biology
Alejandro Gonzalez
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2014/05/12
Re: [R-sig-phylo] 'phylogenetic signal' of a tree independently from a character
Emmanuel Paradis
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2014/05/12
Re: [R-sig-phylo] adjacency matrix / edgelist from igraph into a phylo class
Emmanuel Paradis
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2014/05/12
[R-sig-phylo] adjacency matrix / edgelist from igraph into a phylo class
Wesley Goi
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2014/05/10
[R-sig-phylo] 'phylogenetic signal' of a tree independently from a character
Mattia Prosperi
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2014/05/08
Re: [R-sig-phylo] Simulate discrete character evolution, including internal nodes.
Liam J. Revell
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2014/05/08
[R-sig-phylo] Simulate discrete character evolution, including internal nodes.
Ferguson-Gow, Henry
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2014/05/06
Re: [R-sig-phylo] Phylogenetic signal, variation in rates and sample size
Liam J. Revell
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2014/05/06
Re: [R-sig-phylo] What order are the tips of a tree plotted in?
Emmanuel Paradis
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2014/05/06
[R-sig-phylo] Postdoc in phylogenetic comparative methods
Liam J. Revell
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2014/05/06
Re: [R-sig-phylo] What order are the tips of a tree plotted in?
Andrew Hipp
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2014/05/06
[R-sig-phylo] What order are the tips of a tree plotted in?
Ferguson-Gow, Henry
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2014/05/05
Re: [R-sig-phylo] Phylogenetic signal, variation in rates and sample size
imran khaliq
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2014/05/05
Re: [R-sig-phylo] Phylogenetic signal, variation in rates and sample size
Brian O'Meara
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2014/05/05
Re: [R-sig-phylo] Phylogenetic signal, variation in rates and sample size
dga...@huskers.unl.edu
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2014/05/05
[R-sig-phylo] Phylogenetic signal, variation in rates and sample size
imran khaliq
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2014/05/03
Re: [R-sig-phylo] Difference running Rscript vs source with ape library
Emmanuel Paradis
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2014/05/02
Re: [R-sig-phylo] problem with phylock package
Christoph Heibl
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2014/05/02
[R-sig-phylo] problem with phylock package
Mariana Vasconcellos
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2014/05/02
Re: [R-sig-phylo] generate liability/threshold plot from ancThresh
Liam J. Revell
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2014/05/02
[R-sig-phylo] generate liability/threshold plot from ancThresh
John Denton
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2014/05/02
[R-sig-phylo] Difference running Rscript vs source with ape library
Carlos Anderson
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2014/04/29
[R-sig-phylo] Controlling for MRCA in asreml using a phylogeny
Libby Beckman
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2014/04/28
Re: [R-sig-phylo] drop trees from multiphylo list
David Bapst
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2014/04/28
[R-sig-phylo] drop trees from multiphylo list
John Denton
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2014/04/24
Re: [R-sig-phylo] fitting multiple OU optima
Carl Boettiger
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2014/04/23
[R-sig-phylo] How to plot pgls results?
Lina Moreno Azocar,
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2014/04/22
Re: [R-sig-phylo] "Ape" package.
Frederico Faleiro
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2014/04/22
[R-sig-phylo] fitting multiple OU optima
Santiago Sanchez-Ramirez
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2014/04/22
Re: [R-sig-phylo] fitting multiple OU optima
Florian Boucher
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2014/04/22
[R-sig-phylo] fitting multiple OU optima
Paolo Piras
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2014/04/20
Re: [R-sig-phylo] "Ape" package.
Klaus Schliep
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2014/04/16
Re: [R-sig-phylo] Importing single trees from a tree list
Agus Camacho
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2014/04/16
Re: [R-sig-phylo] Importing single trees from a tree list
Liam J. Revell
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2014/04/16
[R-sig-phylo] Phylogenetic Comparative Tools for High-dimensional Data
Emma Sherratt
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2014/04/16
Re: [R-sig-phylo] Importing single trees from a tree list
Liam J. Revell
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2014/04/16
Re: [R-sig-phylo] Importing single trees from a tree list
Agus Camacho
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2014/04/16
[R-sig-phylo] Importing single trees from a tree list
Agus Camacho
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2014/04/16
[R-sig-phylo] MCMCglmm prior issues
David Bradley
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2014/04/15
Re: [R-sig-phylo] write.nexus.data with DATATYPE=STANDARD
Liam J. Revell
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2014/04/15
[R-sig-phylo] write.nexus.data with DATATYPE=STANDARD
Ryan Felice
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2014/04/14
Re: [R-sig-phylo] pairwise comparisons of 100s of gene tree topologies
Chris Buddenhagen
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2014/04/14
Re: [R-sig-phylo] pairwise comparisons of 100s of gene tree topologies
Eduardo Castro Nallar
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2014/04/14
Re: [R-sig-phylo] pairwise comparisons of 100s of gene tree topologies
Eduardo Ascarrunz
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2014/04/14
Re: [R-sig-phylo] scale root edge of outgroup
Emmanuel Paradis
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2014/04/14
[R-sig-phylo] scale root edge of outgroup
Walter, Mathias
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2014/04/14
Re: [R-sig-phylo] pairwise comparisons of 100s of gene tree topologies
Liam J. Revell
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2014/04/14
Re: [R-sig-phylo] pairwise comparisons of 100s of gene tree topologies
Eduardo Ascarrunz
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2014/04/14
Re: [R-sig-phylo] pairwise comparisons of 100s of gene tree topologies
Emmanuel Paradis
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2014/04/14
Re: [R-sig-phylo] pairwise comparisons of 100s of gene tree topologies
Chris Buddenhagen
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2014/04/14
Re: [R-sig-phylo] pairwise comparisons of 100s of gene tree topologies
Mattia Prosperi
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2014/04/14
[R-sig-phylo] pairwise comparisons of 100s of gene tree topologies
Chris Buddenhagen
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2014/04/12
Re: [R-sig-phylo] chronos function
Emmanuel Paradis
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2014/04/11
Re: [R-sig-phylo] "ape" package.
Hilmar Lapp
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2014/04/11
[R-sig-phylo] "ape" package.
Alexey Fomin
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2014/04/09
Re: [R-sig-phylo] OU rescale of a tree
Julien Clavel
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2014/04/09
[R-sig-phylo] chronos function
Fabricia Nascimento
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2014/04/09
Re: [R-sig-phylo] fitdAICrc
Dan Rabosky
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2014/04/09
[R-sig-phylo] Related OU rescale of tree question
Tristan Stayton
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2014/04/09
[R-sig-phylo] fitdAICrc
Jorge Avaria Llautureo
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2014/04/09
[R-sig-phylo] please post postdoc position
Lee Hsiang Liow
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2014/04/08
Re: [R-sig-phylo] Fatal Crash in ancestral.pars in phangorn
Klaus Schliep
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2014/04/08
[R-sig-phylo] Fatal Crash in ancestral.pars in phangorn
David Bapst
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2014/04/08
Re: [R-sig-phylo] OU rescale of a tree
Julien Clavel
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2014/04/08
[R-sig-phylo] Phylogenetic methods and the fossil record GSA Vancouver 2014 topic session
Lamsdell, James
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2014/04/08
Re: [R-sig-phylo] OU rescale of a tree
Liam J. Revell
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2014/04/08
Re: [R-sig-phylo] chronos and gammaStat
Klaus Schliep
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2014/04/08
[R-sig-phylo] OU rescale of a tree
Nicolas Campione
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2014/04/08
Re: [R-sig-phylo] chronos and gammaStat
Fabricia Nascimento
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2014/04/08
Re: [R-sig-phylo] chronos and gammaStat
Klaus Schliep
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2014/04/08
Re: [R-sig-phylo] chronos and gammaStat
Fabricia Nascimento
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2014/04/08
Re: [R-sig-phylo] chronos and gammaStat
Klaus Schliep
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2014/04/08
[R-sig-phylo] chronos and gammaStat
Fabricia Nascimento
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2014/04/08
Re: [R-sig-phylo] apTreeshape
mblum
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2014/04/08
[R-sig-phylo] apTreeshape
Fabricia Nascimento
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2014/04/07
[R-sig-phylo] error in chronopl
Nachiket Shankar
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2014/04/05
Re: [R-sig-phylo] Error in diversitree with MuSSE models
Rich FitzJohn
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2014/04/04
Re: [R-sig-phylo] R-sig-phylo Digest, Vol 75, Issue 4
Arbuckle, Kevin
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2014/04/03
Re: [R-sig-phylo] Error in diversitree with MuSSE models (Arbuckle, Kevin)
Daniel Caetano
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2014/04/02
Re: [R-sig-phylo] Error in diversitree with MuSSE models
Arbuckle, Kevin
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2014/04/01
[R-sig-phylo] Error in diversitree with MuSSE models
Arbuckle, Kevin
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2014/04/01
Re: [R-sig-phylo] ape cophyloplot strange horizontal lines
Emmanuel Paradis
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2014/04/01
Re: [R-sig-phylo] Help with 3D NMDS Plot
Rob Lanfear
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2014/03/31
[R-sig-phylo] ape cophyloplot strange horizontal lines
Johannes Björk
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2014/03/30
Re: [R-sig-phylo] Help with 3D NMDS Plot
Mok Shao Feng
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2014/03/28
[R-sig-phylo] NESCent Academy - Paleobiological and Phylogenetic approaches to Macroevolution (in R)
Sam Price
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2014/03/27
Re: [R-sig-phylo] Calculating haplotype frequencies in Pegas - missing data
Jessica Oswald
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2014/03/27
[R-sig-phylo] Calculating haplotype frequencies in Pegas - missing data
Jessica Oswald
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2014/03/27
[R-sig-phylo] N bifurcating resolutions of a strict consensus tree
Graeme Lloyd
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2014/03/25
Re: [R-sig-phylo] Help with output of rjmcmc.bm
Luke Harmon
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2014/03/24
[R-sig-phylo] Help with 3D NMDS Plot
Mok Shao Feng
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2014/03/19
Re: [R-sig-phylo] Help with plot.phylo, how to extract the tips points coordinates and how to controle de plot area.
Augusto Ribas
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2014/03/19
Re: [R-sig-phylo] Help with plot.phylo, how to extract the tips points coordinates and how to controle de plot area.
Klaus Schliep
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2014/03/19
[R-sig-phylo] Help with plot.phylo, how to extract the tips points coordinates and how to controle de plot area.
Augusto Ribas
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2014/03/19
[R-sig-phylo] chronograms
Santiago Claramunt
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2014/03/19
Re: [R-sig-phylo] Cannot read nexus tree from iTOL in R with read.nexus or read.tree
Liam J. Revell
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2014/03/19
Re: [R-sig-phylo] Cannot read nexus tree from iTOL in R with read.nexus or read.tree
Liam J. Revell
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2014/03/19
[R-sig-phylo] Cannot read nexus tree from iTOL in R with read.nexus or read.tree
Gygli, Gudrun
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2014/03/19
Re: [R-sig-phylo] recreating sc3.png from screenshot page
Emmanuel Paradis
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2014/03/18
[R-sig-phylo] Interpreting Phylogenetically independent contrasts results
Andrea Baquero
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2014/03/18
Re: [R-sig-phylo] net diversification in species poor clades
Luke Harmon
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2014/03/18
[R-sig-phylo] net diversification in species poor clades
Glenn Seeholzer
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2014/03/17
[R-sig-phylo] Error with chronopl function
Eugen
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2014/03/15
Re: [R-sig-phylo] profiles.plot legends
Santiago Sánchez
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2014/03/14
[R-sig-phylo] Outgroup with sim.char
Jo Wolfe
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2014/03/14
Re: [R-sig-phylo] profiles.plot legends
Arbuckle, Kevin
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2014/03/14
Re: [R-sig-phylo] profiles.plot legends
Arbuckle, Kevin
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2014/03/14
[R-sig-phylo] profiles.plot legends
Arbuckle, Kevin
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2014/03/14
Re: [R-sig-phylo] ANOVA for pgls model with marginal sum of squares in caper
Orme, David
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2014/03/14
[R-sig-phylo] ANOVA for pgls model with marginal sum of squares in caper
melissah rowe
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2014/03/13
[R-sig-phylo] FW: Reading sets of multiple DNA sequence alignments
dga...@huskers.unl.edu
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2014/03/13
[R-sig-phylo] RelTime algorithm
Santiago Claramunt
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2014/03/13
Re: [R-sig-phylo] Reading sets of multiple DNA sequence alignments
Liam J. Revell
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2014/03/13
Re: [R-sig-phylo] Reading sets of multiple DNA sequence alignments
Fabricia Nascimento
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2014/03/13
Re: [R-sig-phylo] Reading sets of multiple DNA sequence alignments
François Michonneau
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2014/03/13
[R-sig-phylo] Reading sets of multiple DNA sequence alignments
Fabricia Nascimento
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2014/03/12
[R-sig-phylo] Multivariate Model Selection
Fabio de A. Machado