Messages by Date
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2018/12/16
Re: [R-sig-phylo] OU for non-ultrametric trees
Marguerite Butler
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2018/12/16
Re: [R-sig-phylo] OU for non-ultrametric trees
Danielle Miller
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2018/12/13
Re: [R-sig-phylo] R-sig-phylo Digest, Vol 131, Issue 1
SMITH, MARTIN R.
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2018/12/13
Re: [R-sig-phylo] Branch lengths in phytools::plot.cophylo
Vojtěch Zeisek
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2018/12/12
Re: [R-sig-phylo] Branch lengths in phytools::plot.cophylo
Vojtěch Zeisek
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2018/12/12
Re: [R-sig-phylo] OU for non-ultrametric trees
David Bapst
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2018/12/12
Re: [R-sig-phylo] ape chronos function returning pLL of -1E100
John S Denton
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2018/12/12
Re: [R-sig-phylo] Branch lengths in phytools::plot.cophylo
Liam Revell
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2018/12/12
[R-sig-phylo] ape chronos function returning pLL of -1E100
John S Denton
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2018/12/12
[R-sig-phylo] Branch lengths in phytools::plot.cophylo
Juan Antonio Balbuena
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2018/12/06
Re: [R-sig-phylo] OU for non-ultrametric trees
Brian O'Meara
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2018/12/06
[R-sig-phylo] OU for non-ultrametric trees
Danielle Miller
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2018/12/05
[R-sig-phylo] PhD projects using phylogenetic comparative methods
STREET, SALLY
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2018/11/15
Re: [R-sig-phylo] aov.phylo vs phylANOVA
Jacob Berv
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2018/11/15
Re: [R-sig-phylo] aov.phylo vs phylANOVA
Jacob Berv
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2018/11/15
Re: [R-sig-phylo] aov.phylo vs phylANOVA
Liam J. Revell
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2018/11/15
Re: [R-sig-phylo] aov.phylo vs phylANOVA
Theodore Garland
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2018/11/15
[R-sig-phylo] aov.phylo vs phylANOVA
Jacob Berv
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2018/11/08
[R-sig-phylo] Branch lengths in phytools::plot.cophylo
Vojtěch Zeisek
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2018/10/31
Re: [R-sig-phylo] Problem with make.simmap in Phytools
Liam J. Revell
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2018/10/31
[R-sig-phylo] Problem with make.simmap in Phytools
Kimberly Lynn Foster
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2018/10/27
Re: [R-sig-phylo] Extended Majority Consensus Topology (Allcompat Summary) in R? And some observations on ape's consensus() function
Emmanuel Paradis
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2018/10/27
Re: [R-sig-phylo] Extended Majority Consensus Topology (Allcompat Summary) in R? And some observations on ape's consensus() function
Joe Felsenstein
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2018/10/27
[R-sig-phylo] Extended Majority Consensus Topology (Allcompat Summary) in R? And some observations on ape's consensus() function
David Bapst
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2018/10/27
Re: [R-sig-phylo] Partitioning of functional beta diversity
françois RIGAL
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2018/10/26
[R-sig-phylo] Partitioning of functional beta diversity
' Salatiel Clemente
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2018/10/25
Re: [R-sig-phylo] No PCOA Correction Applied but Corrected Eigenvalues Returned? (ape::pcoa)
Emmanuel Paradis
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2018/10/24
Re: [R-sig-phylo] No PCOA Correction Applied but Corrected Eigenvalues Returned? (ape::pcoa)
David Bapst
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2018/10/23
Re: [R-sig-phylo] No PCOA Correction Applied but Corrected Eigenvalues Returned? (ape::pcoa)
Emmanuel Paradis
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2018/10/23
[R-sig-phylo] No PCOA Correction Applied but Corrected Eigenvalues Returned? (ape::pcoa)
David Bapst
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2018/10/16
Re: [R-sig-phylo] Adding species to genera tree as polytomies
Liam Kendall
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2018/10/16
Re: [R-sig-phylo] Adding species to genera tree as polytomies
Eliot Miller
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2018/10/16
Re: [R-sig-phylo] Adding species to genera tree as polytomies
Richard Grenyer
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2018/10/16
Re: [R-sig-phylo] Adding species to genera tree as polytomies
Liam J. Revell
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2018/10/16
Re: [R-sig-phylo] Adding species to genera tree as polytomies
William Gearty
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2018/10/16
[R-sig-phylo] Phylogenetic comparative methods for studying diversification and phenotypic evolution
Oliver Hooker
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2018/10/16
[R-sig-phylo] Adding species to genera tree as polytomies
Liam Kendall
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2018/10/02
[R-sig-phylo] Book: Mixed and Phylogenetic Models: A Conceptual Introduction to Correlated Data
Anthony R. Ives
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2018/09/26
Re: [R-sig-phylo] change colors in make.simmap
Liam J. Revell
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2018/09/26
Re: [R-sig-phylo] change colors in make.simmap
Gopal Murali
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2018/09/26
[R-sig-phylo] change colors in make.simmap
ramirez
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2018/09/25
Re: [R-sig-phylo] Building phlyogenies from DNA alignments
Emmanuel Paradis
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2018/09/25
[R-sig-phylo] Building phlyogenies from DNA alignments
Zhong Huang
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2018/09/18
Re: [R-sig-phylo] Estimating marginal ancestral states under a non-reversible model of evolution.
Jordan Gault
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2018/09/18
Re: [R-sig-phylo] Estimating marginal ancestral states under a non-reversible model of evolution.
Joe Felsenstein
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2018/09/18
[R-sig-phylo] Estimating marginal ancestral states under a non-reversible model of evolution.
Jordan Gault
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2018/09/15
Re: [R-sig-phylo] Issue with SIMMAP on 500 sampled Trees
Liam J. Revell
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2018/09/15
[R-sig-phylo] Issue with SIMMAP on 500 sampled Trees
Kimberly Lynn Foster
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2018/09/07
[R-sig-phylo] PGLS on PCA axes?
Max Farrell
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2018/09/04
[R-sig-phylo] plot heatmap at nodes
Juan Antonio Balbuena
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2018/08/30
Re: [R-sig-phylo] plot heatmap at nodes
Emmanuel Paradis
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2018/08/30
Re: [R-sig-phylo] plot heatmap at nodes
Jacob Berv
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2018/08/30
Re: [R-sig-phylo] plot heatmap at nodes
Emmanuel Paradis
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2018/08/29
[R-sig-phylo] plot heatmap at nodes
Jacob Berv
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2018/08/27
Re: [R-sig-phylo] understanding variance-covariance matrix
Theodore Garland
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2018/08/27
Re: [R-sig-phylo] Aligning tree tip labels together in ape
Carleson, Nick
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2018/08/27
Re: [R-sig-phylo] understanding variance-covariance matrix
Agus Camacho
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2018/08/26
Re: [R-sig-phylo] understanding variance-covariance matrix
Julien Clavel
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2018/08/26
Re: [R-sig-phylo] AGY coding
Karla Shikev
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2018/08/25
Re: [R-sig-phylo] understanding variance-covariance matrix
Andrew Hipp
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2018/08/25
Re: [R-sig-phylo] understanding variance-covariance matrix
Emmanuel Paradis
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2018/08/25
Re: [R-sig-phylo] understanding variance-covariance matrix
Brian O'Meara
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2018/08/25
[R-sig-phylo] understanding variance-covariance matrix
Agus Camacho
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2018/08/25
Re: [R-sig-phylo] Aligning tree tip labels together in ape
Emmanuel Paradis
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2018/08/24
Re: [R-sig-phylo] AGY coding
Joseph Brown
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2018/08/24
Re: [R-sig-phylo] Aligning tree tip labels together in ape
Liam J. Revell
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2018/08/24
Re: [R-sig-phylo] Aligning tree tip labels together in ape
Bjørn Tore Kopperud
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2018/08/24
[R-sig-phylo] Aligning tree tip labels together in ape
Carleson, Nick
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2018/08/24
[R-sig-phylo] AGY coding
Karla Shikev
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2018/08/12
Re: [R-sig-phylo] Question regarding log likelihood in OUCH package
Liam J. Revell
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2018/08/12
[R-sig-phylo] Question regarding log likelihood in OUCH package
Danielle Miller
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2018/08/11
[R-sig-phylo] Problems with as.phylo.treeshape (library apTreeshape)
Matt Simenc
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2018/08/09
Re: [R-sig-phylo] R-sig-phylo Digest, Vol 127, Issue 4
roee maor
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2018/08/08
Re: [R-sig-phylo] 3-category ordinal probit MCMCglmm model
Theodore Garland
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2018/08/08
[R-sig-phylo] 3-category ordinal probit MCMCglmm model
Andrea Soriano
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2018/08/03
Re: [R-sig-phylo] phylogenetic correction for multiple samples per species along an ecological gradient
Nicolay Cunha
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2018/08/01
Re: [R-sig-phylo] phylogenetic correction for multiple samples per species along an ecological gradient
Masahito Tsuboi
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2018/08/01
Re: [R-sig-phylo] phylogenetic correction for multiple samples per species along an ecological gradient
jonnations
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2018/07/31
Re: [R-sig-phylo] phylogenetic correction for multiple samples per species along an ecological gradient
f . krah
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2018/07/31
Re: [R-sig-phylo] phylogenetic correction for multiple samples per species along an ecological gradient
Theodore Garland
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2018/07/31
[R-sig-phylo] phylogenetic correction for multiple samples per species along an ecological gradient
Nicolay Cunha
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2018/07/30
Re: [R-sig-phylo] p-value in pgls.Ives
Iara Reinaldo Coriolano
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2018/07/30
Re: [R-sig-phylo] p-value in pgls.Ives
Liam J. Revell
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2018/07/30
Re: [R-sig-phylo] Simulating tree from a given tree
Liam J. Revell
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2018/07/30
Re: [R-sig-phylo] Simulating tree from a given tree
Eduardo Ascarrunz
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2018/07/30
[R-sig-phylo] p-value in pgls.Ives
Iara Reinaldo Coriolano
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2018/07/29
[R-sig-phylo] p-value in pgls.Ives
Iara Reinaldo Coriolano
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2018/07/29
[R-sig-phylo] Simulating tree from a given tree
Miguel.Verdu
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2018/07/13
Re: [R-sig-phylo] Measuring Phylogenetic Signal
Theodore Garland
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2018/07/13
Re: [R-sig-phylo] Measuring Phylogenetic Signal
Manabu Sakamoto
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2018/07/13
Re: [R-sig-phylo] Measuring Phylogenetic Signal
David Bapst
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2018/07/13
Re: [R-sig-phylo] Measuring Phylogenetic Signal
Theodore Garland
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2018/07/13
Re: [R-sig-phylo] Measuring Phylogenetic Signal
Liam J. Revell
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2018/07/13
[R-sig-phylo] Measuring Phylogenetic Signal
Alyson Brokaw
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2018/07/09
Re: [R-sig-phylo] keeping states discrete when plotting HiSSE results
Brian O'Meara
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2018/07/03
[R-sig-phylo] keeping states discrete when plotting HiSSE results
Bonnie Blaimer
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2018/06/27
[R-sig-phylo] Bayou and surface Tree Plots
Sandro Sehner
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2018/06/25
Re: [R-sig-phylo] ape-package: unknown states in ace analyses?
Théo Léger
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2018/06/22
Re: [R-sig-phylo] ape-package: unknown states in ace analyses?
Jacob Berv
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2018/06/22
Re: [R-sig-phylo] ape-package: unknown states in ace analyses?
Emmanuel Paradis
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2018/06/22
Re: [R-sig-phylo] ape-package: unknown states in ace analyses?
Emmanuel Paradis
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2018/06/21
Re: [R-sig-phylo] Comparing DIC of phylogenetic and non-phylogenetic GLMM run with MCMC (MCMCglmm)
Liam Kendall
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2018/06/21
Re: [R-sig-phylo] ape-package: unknown states in ace analyses?
Liam J. Revell
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2018/06/21
[R-sig-phylo] ape-package: unknown states in ace analyses?
Théo Léger
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2018/06/21
Re: [R-sig-phylo] Comparing DIC of phylogenetic and non-phylogenetic GLMM run with MCMC (MCMCglmm)
Jarrod Hadfield
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2018/06/21
[R-sig-phylo] Comparing DIC of phylogenetic and non-phylogenetic GLMM run with MCMC (MCMCglmm)
jonnations
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2018/06/20
[R-sig-phylo] Comparing DIC of phylogenetic and non-phylogenetic GLMM run with MCMC (MCMCglmm)
Liam Kendall
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2018/06/20
Re: [R-sig-phylo] estimate ancestral state with OUwie models
David Bapst
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2018/06/19
Re: [R-sig-phylo] diversification rates with two traits present simultaneously
Brian O'Meara
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2018/06/18
Re: [R-sig-phylo] diversification rates with two traits present simultaneously
Gilles Benjamin Leduc
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2018/06/18
Re: [R-sig-phylo] diversification rates with two traits present simultaneously
William Gearty
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2018/06/18
[R-sig-phylo] diversification rates with two traits present simultaneously
Elizabeth Christina Miller
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2018/06/14
Re: [R-sig-phylo] estimate ancestral state with OUwie models
Jacob Berv
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2018/06/14
Re: [R-sig-phylo] estimate ancestral state with OUwie models
Cecile Ane
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2018/06/14
Re: [R-sig-phylo] estimate ancestral state with OUwie models
David Bapst
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2018/06/14
Re: [R-sig-phylo] estimate ancestral state with OUwie models
David Bapst
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2018/06/12
Re: [R-sig-phylo] estimate ancestral state with OUwie models
Nick Matzke
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2018/06/12
Re: [R-sig-phylo] estimate ancestral state with OUwie models
Joe Felsenstein
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2018/06/12
Re: [R-sig-phylo] estimate ancestral state with OUwie models
Thomas F Hansen
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2018/06/12
Re: [R-sig-phylo] estimate ancestral state with OUwie models
John Soghigian
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2018/06/12
Re: [R-sig-phylo] estimate ancestral state with OUwie models
Simone Blomberg
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2018/06/12
Re: [R-sig-phylo] estimate ancestral state with OUwie models
Marguerite Butler
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2018/06/11
Re: [R-sig-phylo] estimate ancestral state with OUwie models
Simone Blomberg
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2018/06/11
Re: [R-sig-phylo] estimate ancestral state with OUwie models
Brian O'Meara
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2018/06/11
Re: [R-sig-phylo] estimate ancestral state with OUwie models
David Bapst
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2018/06/11
Re: [R-sig-phylo] Testing tree disagreement: SH-test disappeared in ape-package
Sebastian Y . Müller
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2018/06/10
Re: [R-sig-phylo] estimate ancestral state with OUwie models
Lucas Jardim
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2018/06/09
Re: [R-sig-phylo] estimate ancestral state with OUwie models
Diogo B. Provete
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2018/06/08
[R-sig-phylo] estimate ancestral state with OUwie models
Vilela de Moraes e Silva, Bruno
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2018/06/08
Re: [R-sig-phylo] Testing tree disagreement: SH-test disappeared in ape-package
Emmanuel Paradis
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2018/06/08
Re: [R-sig-phylo] Testing tree disagreement: SH-test disappeared in ape-package
Klaus Schliep
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2018/06/08
[R-sig-phylo] Testing tree disagreement: SH-test disappeared in ape-package
Sebastian Y . Müller
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2018/05/24
Re: [R-sig-phylo] remove phylogenetic signal from large dataset
françois RIGAL
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2018/05/23
Re: [R-sig-phylo] remove phylogenetic signal from large dataset
Julien Clavel
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2018/05/23
[R-sig-phylo] remove phylogenetic signal from large dataset
fran?ois RIGAL
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2018/05/15
Re: [R-sig-phylo] midpoint.root Error in phy$edge[, 2] : incorrect number of dimensions
Juan Antonio Balbuena
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2018/05/15
Re: [R-sig-phylo] midpoint.root Error in phy$edge[, 2] : incorrect number of dimensions
Liam J. Revell
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2018/05/15
Re: [R-sig-phylo] midpoint.root Error in phy$edge[, 2] : incorrect number of dimensions
Juan Antonio Balbuena
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2018/05/15
Re: [R-sig-phylo] midpoint.root Error in phy$edge[, 2] : incorrect number of dimensions
Liam J. Revell
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2018/05/15
Re: [R-sig-phylo] midpoint.root Error in phy$edge[, 2] : incorrect number of dimensions
Liam J. Revell
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2018/05/15
[R-sig-phylo] midpoint.root Error in phy$edge[, 2] : incorrect number of dimensions
Juan Antonio Balbuena
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2018/05/14
Re: [R-sig-phylo] is.binary() says "FALSE" after using multi2di()
Pedro Pequeno
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2018/05/14
Re: [R-sig-phylo] is.binary() says "FALSE" after using multi2di()
Liam J. Revell
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2018/05/14
Re: [R-sig-phylo] is.binary() says "FALSE" after using multi2di()
Graham Slater
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2018/05/14
[R-sig-phylo] is.binary() says "FALSE" after using multi2di()
Pedro Pequeno
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2018/05/10
[R-sig-phylo] Postdoctoral position in R phylogenetics
Liam J. Revell
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2018/05/07
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
Eliot Miller
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2018/05/07
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
David Bapst
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2018/05/04
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
Rafael S Marcondes
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2018/05/04
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
Eliot Miller
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2018/05/03
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
Liam J. Revell
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2018/05/03
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
Theodore Garland
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2018/05/03
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
Liam J. Revell
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2018/05/03
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
David Bapst
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2018/05/02
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
Brian O'Meara
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2018/05/02
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
David Bapst
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2018/05/02
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
David Bapst
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2018/05/02
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
Eliot Miller
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2018/05/02
Re: [R-sig-phylo] Problem with negative ages in OUwie.boot?
Rafael S Marcondes
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2018/05/02
[R-sig-phylo] Problem with negative ages in OUwie.boot?
Rafael S Marcondes
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2018/04/27
[R-sig-phylo] Postdoc in PCM development in the Revell lab
Liam J. Revell
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2018/04/27
Re: [R-sig-phylo] grafting chronograms onto backbone phylogeny
Chris Law
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2018/04/26
Re: [R-sig-phylo] grafting chronograms onto backbone phylogeny
Liam J. Revell
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2018/04/26
Re: [R-sig-phylo] grafting chronograms onto backbone phylogeny
Brian O'Meara
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2018/04/26
[R-sig-phylo] grafting chronograms onto backbone phylogeny
Chris Law
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2018/04/20
Re: [R-sig-phylo] Bounded Brownian model
Florian Boucher
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2018/04/19
[R-sig-phylo] Bounded Brownian model
Roi Holzman
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2018/04/16
[R-sig-phylo] Reading ASTRAL trees into R
Tomas Fer
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2018/04/15
Re: [R-sig-phylo] diversification rates
Lilian Sayuri Ouchi de Melo
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2018/04/15
Re: [R-sig-phylo] diversification rates
Upham, Nathan
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2018/04/14
Re: [R-sig-phylo] diversification rates
William Gearty
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2018/04/14
[R-sig-phylo] diversification rates
Lilian Sayuri Ouchi de Melo
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2018/04/10
Re: [R-sig-phylo] "Not of class phylo" error when lapply is used
jschenk
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2018/04/10
Re: [R-sig-phylo] "Not of class phylo" error when lapply is used
Jacob Berv
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2018/04/09
Re: [R-sig-phylo] "Not of class phylo" error when lapply is used
jschenk
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2018/04/09
Re: [R-sig-phylo] "Not of class phylo" error when lapply is used
Emmanuel Paradis
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2018/04/09
Re: [R-sig-phylo] "Not of class phylo" error when lapply is used
Liam J. Revell
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2018/04/09
[R-sig-phylo] "Not of class phylo" error when lapply is used
jschenk
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2018/04/07
[R-sig-phylo] quantitative state dependent diversification of another quantitative trait (Zach Culumber)
krzysztofbartoszek
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2018/04/05
Re: [R-sig-phylo] quantitative state dependent diversification of another quantitative trait
Zach Culumber
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2018/04/04
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Masahito Tsuboi
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2018/04/04
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Marguerite Butler
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2018/04/04
Re: [R-sig-phylo] quantitative state dependent diversification of another quantitative trait
Julien Clavel
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2018/04/04
Re: [R-sig-phylo] quantitative state dependent diversification of another quantitative trait
Brian O'Meara
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2018/04/04
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Brian O'Meara
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2018/04/04
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Brian O'Meara
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2018/04/04
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Liam J. Revell
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2018/04/04
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Jacob Berv
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2018/04/04
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Rafael S Marcondes
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2018/04/04
Re: [R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
William Gearty
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2018/04/04
[R-sig-phylo] Interpretation of standard errors of parameter estimates in OUwie models
Rafael S Marcondes
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2018/04/04
[R-sig-phylo] quantitative state dependent diversification of another quantitative trait
Zach Culumber
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2018/03/28
Re: [R-sig-phylo] Detection association between traits
Joe Felsenstein
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2018/03/22
Re: [R-sig-phylo] correlation of binary and multistate
Arbuckle Kevin .
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2018/03/21
Re: [R-sig-phylo] correlation of binary and multistate
Brian O'Meara
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2018/03/21
[R-sig-phylo] correlation of binary and multistate
John Denton
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2018/03/20
[R-sig-phylo] Help for QuaSSE analysis (diversitree)
Charles Pouchon
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2018/03/20
[R-sig-phylo] Plot interactions which are fitted by PGLS models.
Long, X.
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2018/03/19
[R-sig-phylo] correlation of characters from stochastic maps
John Denton
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2018/03/13
Re: [R-sig-phylo] plot.cophylo: some edges missing
Juan Antonio Balbuena