Hi Thibaut, Is there anyway I can save the concatenated alignment (created using apex and the concatenate function) in FASTA format?
Regards, Rav On 12 Sep 2016, at 13:45, Thibaut Jombart <thibautjomb...@gmail.com<mailto:thibautjomb...@gmail.com>> wrote: Hi there, apex can do this using the 'concatenate' function: https://github.com/thibautjombart/apex Cheers Thibaut -- Dr Thibaut Jombart Lecturer, Department of Infectious Disease Epidemiology, Imperial College London Head of RECON: https://reconhub.github.io/ https://sites.google.com/site/thibautjombart/ https://github.com/thibautjombart Twitter: @TeebzR<https://twitter.com/TeebzR> On 12 September 2016 at 11:41, Bhuller, Ravneet <ravneet.bhulle...@imperial.ac.uk<mailto:ravneet.bhulle...@imperial.ac.uk>> wrote: Dear Members, Any suggestions on how to concatenate the aligned gene sequences in fasta format so as to get whole genome alignments? I need whole genome alignments as an input to a phylogenetic tool. Many thanks, Rav _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org<mailto:R-sig-phylo@r-project.org> https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/ [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
