Just to follow up on this, here is an example using plotTree.barplot with xlim set using args.barplot: http://blog.phytools.org/2016/07/more-on-showing-barplot-next-to-plotted.html.

All the best, Liam

Liam J. Revell, Associate Professor of Biology
University of Massachusetts Boston
web: http://faculty.umb.edu/liam.revell/
email: liam.rev...@umb.edu
blog: http://blog.phytools.org

On 10/17/2016 10:43 AM, Liam Revell wrote:
Hi Marian.



You should be able to do it with the phytools function plotTree.barplot using 
the argument args.barplot, supplied as a list containing the arguments you want 
to pass to barplot. Not sure if this is on CRAN yet so you might have to 
install from GitHub.



Let me know if you need help.



--
Liam J. Revell, Associate Professor of Biology
University of Massachussetts Boston
email: liam.rev...@umb.edu
web: http://faculty.umb.edu/liam.revell

Sent from Outlook Mail for Windows 10 phone



From: Marian Schubert<mailto:marian.schub...@nmbu.no>
Sent: Monday, October 17, 2016 9:12 AM
To: r-sig-phylo@r-project.org<mailto:r-sig-phylo@r-project.org>
Subject: [R-sig-phylo] Truncate x-axis in phydataplot barplots



Hey APE users,

I was wondering if there is a possibility to limit the dimensions of the x-axis 
for barplots created with phydataplot(). With other words, in barplot() I have 
the option to set xlim, how can I achieve the equivalent in phydataplot()?

Cheers and thanks in advance!
marian

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