to install phybase from the CRAN archive:
install.packages("https://cran.r-project.org/src/contrib/Archive/phybase/phybase_1.1.tar.gz";,
repos = NULL, type="source")
Cécile
On Dec 18, 2016, at 4:26 AM, Liam J. Revell
<liam.rev...@umb.edu<mailto:liam.rev...@umb.edu>> wrote:
Hi John.
I believe this used to be possible using the package phybase. Unfortunately,
this package was not being maintained & was removed from CRAN - however
archived package versions can still be obtained (so it may be possible to
install from source).
All the best, Liam
Liam J. Revell, Associate Professor of Biology
University of Massachusetts Boston
web: http://faculty.umb.edu/liam.revell/
email: liam.rev...@umb.edu<mailto:liam.rev...@umb.edu>
blog: http://blog.phytools.org
On 12/18/2016 7:22 AM, john d wrote:
Dear colleagues,
I'm looking for an R package that will simulate gene trees onto a given
species tree and a value of theta. I tried TreeSim, but it would use a
provided tree as input.
I know that DendroPy does that, but I'd prefer using R.
Thanks!
Carlos
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