Hi Carlos,
I would check out phybase at http://faculty.franklin.uga.edu/lliu/content/phybase . I have used it to simulate gene trees from species trees. It works quite well and is very fast. -Dan ________________________________ From: R-sig-phylo <r-sig-phylo-boun...@r-project.org> on behalf of john d <dobzhan...@gmail.com> Sent: Sunday, December 18, 2016 4:22:32 AM To: mailman, r-sig-phylo Subject: [R-sig-phylo] simulating gene trees on a given species tree and theta Dear colleagues, I'm looking for an R package that will simulate gene trees onto a given species tree and a value of theta. I tried TreeSim, but it would use a provided tree as input. I know that DendroPy does that, but I'd prefer using R. Thanks! Carlos [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/ [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
