If I create a test.nex file as follows:
#NEXUS
BEGIN TREES;
TRANSLATE
0 0,
1 1,
2 2,
3 3,
4 4,
5 5,
6 6,
7 7;
TREE test = (((3,5),(4,6)),(0,(2,(1,7))));
END;
And then attempt to do
> plot(read.nexus("test.nex"))
I get
Error in plot.phylo(m) :
tree badly conformed; cannot plot. Check the edge matrix.
It works fine if I start indexing tips at 1.
Yan
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