Thanks. I think that’s because read_nexus_phylo() doesn’t do .compressTipLabel 
automatically

n <- read_nexus_phylo("tmp.nex")
n2 <- .compressTipLabel(n)
multi2di(n2) #this causes an error.

Unfortunately I need the .compressTipLabel functionality really.

Yan


On 13 Jan 2017, at 17:06, François Michonneau <francois.michonn...@gmail.com> 
wrote:

> Hi Yan,
> 
>  I'm not sure about what's going on here, but it works with the rncl
> package (http://cran.r-project.org/web/packages/rncl/index.html)
> 
>  install.packages("rncl")
>  library(rncl)
>  n <- read_nexus_phylo("tmp.nex")

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