I'm PhD student and I have genomic bacterial data and want to produce a
tree from it. I'm currently using around 10 genomes and I calculated their
"Average Amino acid Identity" so I have the distance matrix
(distance=1-AAI). I produced with ape a neighbor joining tree, and wanted
to produce bootstrap support. Since I feed R with the distance matrix, I
cannot use the command boot.phylo, that requires "a taxa (rows) by
characters (columns) matrix" as one of the inputs.
Could you give me any suggestion, please?
Thanks a lot!
Salvador Espada Hinojosa
Monika Bright's Lab
Division of Marine Biology
Department of Limnology and Biological Oceanography (LIMBO)
University of Vienna
1090 Vienna (Austria)
Work: (+43) 1 4277 76437
Home: (+43) 1 946 28 96
Mobile: (+43) 660 5952724
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