hello, I'm PhD student and I have genomic bacterial data and want to produce a tree from it. I'm currently using around 10 genomes and I calculated their "Average Amino acid Identity" so I have the distance matrix (distance=1-AAI). I produced with ape a neighbor joining tree, and wanted to produce bootstrap support. Since I feed R with the distance matrix, I cannot use the command boot.phylo, that requires "a taxa (rows) by characters (columns) matrix" as one of the inputs.
Could you give me any suggestion, please? Thanks a lot! -- Salvador Espada Hinojosa Monika Bright's Lab Division of Marine Biology Department of Limnology and Biological Oceanography (LIMBO) University of Vienna Althanstraße, 14 1090 Vienna (Austria) Work: (+43) 1 4277 76437 Home: (+43) 1 946 28 96 Mobile: (+43) 660 5952724 skype: salva_e http://salvae.net <http://about.me/salvae> [[alternative HTML version deleted]] _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
