this looks like really great tool. The chapter about median trees at https://
thibautjombart.github.io/treespace/ is something different from what I need. 
But I will definitely use it, for little different task. :-)
Thank You,

Dne úterý 25. dubna 2017 19:59:34 CEST jste napsal(a):
> Hi there,
> treespace would be an alternative, but its usefulness for 5 trees will
> be quite limited. Just in case:
> https://github.com/thibautjombart/treescape
> Cheers
> Thibaut
> On 25 April 2017 at 18:20, Vojtěch Zeisek <vo...@trapa.cz> wrote:
> > Hello,
> > for comparison of two trees I can use very nice function cophyloplot
> > plotting two trees (left and right) and connecting respective nodes by
> > lines. Very nice and convenient to read. But only for two trees.
> > Displaying multiple trees in multiple comparisons is not very convenient.
> > To display dozens to hundreds of trees there is densitree. Also nice, but
> > for this purpose I don't like its display.
> > I have several trees (~5) and I wish to compare their topologies, show
> > supports (at least for differing nodes) and highlight differences. I
> > thought about some overlay/parallel plotting (similar to the attached
> > image) where there would be complete topologies displayed and
> > incongruences would be easily visible. It would be probably doable by
> > plotting all separate trees by plot.phylo and then combining and tuning
> > the figure in some vector editor (like Inkscape). But I hope there is
> > some more automated way to do it. :-) Sincerely,
> > V.
Vojtěch Zeisek

Department of Botany, Faculty of Science
Charles University, Prague, Czech Republic

Institute of Botany, Czech Academy of Sciences
Průhonice, Czech Republic

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