Dear look your data the "tree.phy"
Inside BEGIN TAXA; the name of tax need be exactly equals in as TRANSLATE
see my .phy example bellow the same error are occurring to me (the names of
argument 'x' and the tip labels of the tree did not match: the former were
ignored in the analysis.) I solve it by change the taxon macularius, this
taxon was with an extra h at the end in the section TRANSLATE. a just
remove this "h" and tried to run the command again, and no error/warning
message.
#NEXUS
BEGIN TAXA;
DIMENSIONS ntax=5
TAXLABELS
macularius
pusilla
collaris
semipalmatus
antilarum
;
END;
BEGIN TREES;
TRANSLATE
1 maculariush,
2 pusilla,
3 collaris,
4 semipalmatus,
5 antilarum,
;
TREE tree_1 = [&R]
((1:0.10820559,2:0.07532207):0.04591014,(3:0.55047517,4:0.01800012):0.07815226,5:0.07346231);
END;
--
Patrick Douglas Corrêa Pereira
Laboratório de Biologia Molecular e Neuroecologia - Instituto Federal do
Pará Campus Bragança.
Rua da Escola Agrícola s/n, Vila Sinhá, Bragança, Pará, Brasil.
Telefone: +55 (91) 9 85404339
E-mail:
patrickpereira...@gmail.com
patr...@ufpa.br
patrickpereira...@hotmail.com
[[alternative HTML version deleted]]
_______________________________________________
R-sig-phylo mailing list - R-sig-phylo@r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-phylo
Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
