Hi Greg,
Thanks for looking into this. Some time has gone by and I’m not sure if the
changes you were referring to have been checked in yet, but I’m back to trying
to get things running on both macos and linux.
Unfortunately, things seem to be getting worse. While everything seems to build
OK, when I run “make test” on macos, I get only 46% of tests passing. About
half of the failures are seg faults, the other half are failures. Is this to be
expected? On my linux box, it’s actually even worse, 38% of tests passing.
I’m happy to send the list of failing tests, but I figured I’m probably doing
something wrong and that I should get the basics working first before I try to
figure out which specific tests are failing (much less solve my SVG problem).
It’s quite possible that the twisty maze of multiple versions of python (not to
mention python libraries), boost, etc… are rearing the ugly head and I’m not
quite sure where to begin trying to fix things. Suggestions?
thanks,
Cyrus
> On Mar 9, 2015, at 10:37 PM, Greg Landrum <greg.land...@gmail.com> wrote:
>
> Hi Cyrus,
>
> That's something we missed when we did the Python3 port of the RDKit.
> It turns out that there are a few of these problems in the rdkit.sping
> package that need to be brought up to date.
>
> I will get those fixed and checked in the next day or so.
>
> Thanks for reporting the problem,
> -greg
>
>
> On Tue, Mar 10, 2015 at 2:37 AM, Cyrus Harmon <cy...@bobobeach.com
> <mailto:cy...@bobobeach.com>> wrote:
> I’m trying to get a python program that uses rdkit running on macos and I
> keep getting the following error:
>
> File "./rdkit-2d-draw.py", line 31, in <module>
> Draw.MolToFile(mol,args.output,size=(500,500))
> File "/usr/local/lib/python3.4/site-packages/rdkit/Chem/Draw/__init__.py",
> line 167, in MolToFile
> canvas = Canvas(size=size,name=fileName,imageType=imageType)
> File
> "/usr/local/lib/python3.4/site-packages/rdkit/Chem/Draw/spingCanvas.py", line
> 33, in __init__
> from rdkit.sping.SVG.pidSVG import SVGCanvas as _Canvas
> File "/usr/local/lib/python3.4/site-packages/rdkit/sping/SVG/__init__.py",
> line 3, in <module>
> from pidSVG import *
> ImportError: No module named 'pidSVG'
>
> It works for me on my unix box that uses the debian packaged rdkit, but fails
> for me on MacOS. Surely I’m doing something wrong in configuring my various
> python libraries, but I’m at a loss as to how to fix this.
>
> Any suggestions on how to make my program find the pidSVG stuff?
>
> thanks,
>
> Cyrus
>
>
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