Dear Stephane:
Thank you very much.
I will give it a try.
Cheers,
Markus

On Tue, Mar 7, 2017 at 3:39 PM, Stéphane Téletchéa <
stephane.teletc...@univ-nantes.fr> wrote:

> Le 07/03/2017 à 19:00, Markus Metz a écrit :
> > Does anybody have a suggestion how I might change the molecular
> > representation?
>
> Dear Markus,
>
> If you want a clever image, you could use pymol in XML-RPC mode
> (https://iwatobipen.wordpress.com/2013/09/16/rdkit-and-pymol/),
> or draw an image with thicker bonds
> (http://asteeves.github.io/blog/2015/01/12/optimizing-in-rdkit/, but
> check also http://asteeves.github.io/blog/2015/01/14/editing-in-rdkit/
> especially the second point for drawing parameters).
>
> I'm not 100% sure it will be perfect for your needs, especially if you
> have large molecules (or a lot of them), but at least you have entry
> pointers to dig with.
>
> Best,
>
> Stéphane
>
> --
> Lecturer, UFIP, UMR 6286 CNRS, Team Protein Design In Silico
> UFR Sciences et Techniques, 2, rue de la Houssinière, Bât. 25, 44322
> Nantes cedex 03, France
> Tél : +33 251 125 636 / Fax : +33 251 125 632
> http://www.ufip.univ-nantes.fr/ - http://www.steletch.org
>
>
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