Hi (Riccardo).

I have trouble with the conda build in Docker (I just updated to the most
recent version which triggered the new build) - below is the error trace. I
took the original Docker file and just edited out all non-Python35 builds -
so it does only the Python35 builds and ends somewhere when
rdkit-postgres95 is built. Does somebody have the same problem?

Thanks,
Markus

make[3]: Entering directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/port'
make -C ../backend submake-errcodes
make[3]: Entering directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/backend/catalog'
cd ../../../src/include/catalog && /bin/sh ../../../config/missing perl
./duplicate_oids
make -C utils probes.h
***
ERROR: Perl is missing on your system. It is needed unless you are building
from an unmodified official distribution of PostgreSQL.
***
make[3]: Leaving directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/backend/catalog'
make[3]: *** [postgres.bki] Error 1
make[2]: *** [submake-schemapg] Error 2
make[2]: *** Waiting for unfinished jobs....
make[3]: Entering directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/backend/utils'
sed -f ./Gen_dummy_probes.sed probes.d >probes.h
make[3]: Leaving directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/backend/utils'
make[4]: Entering directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/backend'
make[4]: Nothing to be done for `submake-errcodes'.
make[4]: Leaving directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/backend'
make[3]: Leaving directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/port'
make -C ../../src/common all
make[3]: Entering directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/common'
make -C ../backend submake-errcodes
make[4]: Entering directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/backend'
make[4]: Nothing to be done for `submake-errcodes'.
make[4]: Leaving directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/backend'
make[3]: Leaving directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/common'
make[2]: Leaving directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src/backend'
make[1]: *** [all-backend-recurse] Error 2
make[1]: Leaving directory
`/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/src'
make: *** [all-src-recurse] Error 2
Traceback (most recent call last):
  File "/home/rdkit/miniconda/bin/conda-build", line 6, in <module>
 path in binary file share/terminfo/w/wsvt25
Detected hard-coded path in binary file share/terminfo/w/wsvt25m
Detected hard-coded path in binary file share/terminfo/x/x68k
Detected hard-coded path in binary file share/terminfo/x/x68k-ite
Detected hard-coded path in binary file share/terminfo/z/z29a
Detected hard-coded path in binary file share/terminfo/z/z29a-kc-bc
Detected hard-coded path in binary file share/terminfo/z/z29a-kc-uc
Detected hard-coded path in binary file share/terminfo/z/z29a-nkc-bc
Detected hard-coded path in binary file share/terminfo/z/z29a-nkc-uc
Detected hard-coded path in binary file share/terminfo/z/z340
Detected hard-coded path in binary file share/terminfo/z/z340-nam
Detected hard-coded path in text file bin/ncurses6-config
Detected hard-coded path in text file share/man/man1/captoinfo.1m
Detected hard-coded path in text file share/man/man1/infocmp.1m
Detected hard-coded path in text file share/man/man1/infotocap.1m
Detected hard-coded path in text file share/man/man1/ncurses6-config.1
Detected hard-coded path in text file share/man/man1/tic.1m
Detected hard-coded path in text file share/man/man1/toe.1m
Detected hard-coded path in text file share/man/man1/tput.1
Detected hard-coded path in text file share/man/man1/tset.1
Detected hard-coded path in text file share/man/man3/ncurses.3x
Detected hard-coded path in text file share/man/man3/panel.3x
Detected hard-coded path in text file share/man/man5/term.5
Detected hard-coded path in text file share/man/man5/terminfo.5
Detected hard-coded path in text file share/man/man7/term.7
/home/rdkit/bld/linux-64/ncurses-6.0-0.tar.bz2
Nothing to test for: /home/rdkit/bld/linux-64/ncurses-6.0-0.tar.bz2
BUILD START: postgresql95-9.5.2-py35_0

The following NEW packages will be INSTALLED:

    libiconv:   1.14-0
    libxml2:    2.9.4-0
    libxslt:    1.1.29-0
    ncurses:    6.0-0         local
    openssl:    1.0.2k-1
    pip:        9.0.1-py35_1
    python:     3.5.3-1
    readline:   6.2-2
    setuptools: 27.2.0-py35_0
    sqlite:     3.13.0-0
    tk:         8.5.18-0
    wheel:      0.29.0-py35_0
    xz:         5.2.2-1
    zlib:       1.2.8-3

Source cache directory is: /home/rdkit/bld/src_cache
Downloading source to cache: postgresql-9.5.2.tar.bz2
Downloading
https://ftp.postgresql.org/pub/source/v9.5.2/postgresql-9.5.2.tar.bz2
Success
Applying patch:
u'/home/rdkit/conda-rdkit/postgresql95/prefer_ncurses_to_termcap.patch'
Package: postgresql95-9.5.2-py35_0
source tree in:
/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2
    sys.exit(conda_build.cli.main_build.main())
  File
"/home/rdkit/miniconda/lib/python2.7/site-packages/conda_build/cli/main_build.py",
line 334, in main
    execute(sys.argv[1:])
  File
"/home/rdkit/miniconda/lib/python2.7/site-packages/conda_build/cli/main_build.py",
line 325, in execute
    noverify=args.no_verify)
  File
"/home/rdkit/miniconda/lib/python2.7/site-packages/conda_build/api.py",
line 97, in build
    need_source_download=need_source_download, config=config)
  File
"/home/rdkit/miniconda/lib/python2.7/site-packages/conda_build/build.py",
line 1503, in build_tree
    config=config)
  File
"/home/rdkit/miniconda/lib/python2.7/site-packages/conda_build/build.py",
line 1135, in build
    utils.check_call_env(cmd, env=env, cwd=src_dir)
  File
"/home/rdkit/miniconda/lib/python2.7/site-packages/conda_build/utils.py",
line 620, in check_call_env
    return _func_defaulting_env_to_os_environ(subprocess.check_call,
*popenargs, **kwargs)
  File
"/home/rdkit/miniconda/lib/python2.7/site-packages/conda_build/utils.py",
line 616, in _func_defaulting_env_to_os_environ
    return func(_args, **kwargs)
  File "/home/rdkit/miniconda/lib/python2.7/subprocess.py", line 186, in
check_call
    raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/bin/bash', '-x', '-e',
'/home/rdkit/bld/postgresql95_1491429385957/work/postgresql-9.5.2/conda_build.sh']'
returned non-zero exit status 2
The command '/bin/sh -c CONDA_PY=35 conda build boost --quiet
--no-anaconda-upload &&     CONDA_PY=35 conda build nox --quiet
--no-anaconda-upload &&     CONDA_PY=35 conda build cairo_nox --quiet
--no-anaconda-upload &&     CONDA_PY=35 conda build cairocffi --quiet
--no-anaconda-upload &&     CONDA_PY=35 conda build eigen --quiet
--no-anaconda-upload &&     CONDA_PY=35 conda build rdkit --quiet
--no-anaconda-upload &&     CONDA_PY=35 conda build postgresql95 --quiet
--no-anaconda-upload &&     CONDA_PY=35 conda build rdkit-postgresql95
--quiet --no-anaconda-upload &&     CONDA_NPY=110 conda build rdkit --quiet
--no-anaconda-upload &&     CONDA_PY=35 CONDA_NPY=110 conda build rdkit
--quiet --no-anaconda-upload' returned a non-zero code: 1
------------------------------------------------------------------------------
Check out the vibrant tech community on one of the world's most
engaging tech sites, Slashdot.org! http://sdm.link/slashdot
_______________________________________________
Rdkit-discuss mailing list
Rdkit-discuss@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/rdkit-discuss

Reply via email to