Dear Greg (and RDKitters),
good news is: I just re-ran “conda install -c rdkit rdkit”, and at least rdkit
is working properly.
“import pillow” still does not work.
This is the output of “conda list”:
backports-abc 0.5 <pip>
backports.shutil-get-terminal-size 1.0.0 <pip>
bleach 2.0.0 <pip>
boost 1.56.0 py27_3 rdkit
bzip2 1.0.6 vc9_3 [vc9]
certifi 2017.4.17 <pip>
colorama 0.3.9 <pip>
configparser 3.5.0 <pip>
decorator 4.0.11 <pip>
entrypoints 0.2.3 <pip>
enum34 1.1.6 <pip>
freetype 2.5.5 vc9_2 [vc9]
functools32 3.2.3.post2 <pip>
html5lib 0.999999999 <pip>
idisplay 0.1.2 <pip>
ipykernel 4.6.1 <pip>
ipython 5.4.1 <pip>
ipython-genutils 0.2.0 <pip>
ipywidgets 6.0.0 <pip>
Jinja2 2.9.6 <pip>
jpeg 9b vc9_0 [vc9]
jsonschema 2.6.0 <pip>
jupyter 1.0.0 <pip>
jupyter-client 5.0.1 <pip>
jupyter-console 5.1.0 <pip>
jupyter-core 4.3.0 <pip>
libpng 1.6.27 vc9_0 [vc9]
libtiff 4.0.6 vc9_3 [vc9]
MarkupSafe 1.0 <pip>
mistune 0.7.4 <pip>
mkl 2017.0.1 0
nbconvert 5.2.1 <pip>
nbformat 4.3.0 <pip>
notebook 5.0.0 <pip>
numpy 1.11.3 py27_0
olefile 0.44 py27_0
pandas 0.20.1 np111py27_0
pandocfilters 1.4.1 <pip>
pathlib2 2.2.1 <pip>
pickleshare 0.7.4 <pip>
pillow 4.2.0 py27_0
pip 9.0.1 py27_1
prompt-toolkit 1.0.14 <pip>
py3Dmol 0.6.3 <pip>
Pygments 2.2.0 <pip>
python 2.7.13 1
python-dateutil 2.6.0 <pip>
python-dateutil 2.6.0 py27_0
pytz 2017.2 py27_0
pyzmq 16.0.2 <pip>
qtconsole 4.3.0 <pip>
scandir 1.5 <pip>
setuptools 27.2.0 py27_1
setuptools 36.0.1 <pip>
simplegeneric 0.8.1 <pip>
singledispatch 3.4.0.3 <pip>
six 1.10.0 py27_0
six 1.10.0 <pip>
testpath 0.3.1 <pip>
tornado 4.5.1 <pip>
traitlets 4.3.2 <pip>
vs2008_runtime 9.00.30729.5054 0
wcwidth 0.1.7 <pip>
webencodings 0.5.1 <pip>
wheel 0.29.0 py27_0
widgetsnbextension 2.0.0 <pip>
win-unicode-console 0.5 <pip>
zlib 1.2.8 vc9_3 [vc9]
Best regards,
Paul
Von: Greg Landrum [mailto:greg.land...@gmail.com]
Gesendet: Mittwoch, 5. Juli 2017 06:33
An: Paul Czodrowski <paul.czodrow...@merckgroup.com>
Cc: rdkit <rdkit-discuss@lists.sourceforge.net>
Betreff: Re: [Rdkit-discuss] rdkit&pillow
The fact that "import pillow" doesn't work is very suspicious.
Can you please be sure that pillow and the rdkit are both installed in the
active environment by executing:
"conda list"
On Wed, Jul 5, 2017 at 5:50 AM, Paul Czodrowski
<paul.czodrow...@merckgroup.com<mailto:paul.czodrow...@merckgroup.com>> wrote:
Dear Greg (and RDKitters),
before it came to this error message, the conda installation of rdkit was
running properly.
I then did a “conda install pillow” in this conda installation, which now
results in this error.
BTW, “import pillow” shows:
ImportError Traceback (most recent call last)
<ipython-input-1-9eebacc5895b> in <module>()
----> 1 import pillow
ImportError: No module named pillow
“import rdkit” gives:
---------------------------------------------------------------------------
ImportError Traceback (most recent call last)
<ipython-input-2-e537e29c64f4> in <module>()
----> 1 import rdkit
c:\users\m163729\appdata\local\continuum\anaconda2\envs\rdkit_env\lib\site-packages\rdkit\__init__.py
in <module>()
1 try:
----> 2 from .rdBase import rdkitVersion as __version__
3 except ImportError:
4 __version__ = 'Unknown'
5 raise
ImportError: DLL load failed: Das angegebene Modul wurde nicht gefunden.
BZW, “import PIL” works without any problems.
It does not make sense to me that a simple “conda install pillow” screws up the
entire rdkit installion (I have never faced this before, at least when using
several Linux boxes).
Cheers,
Paul
Von: Greg Landrum [mailto:greg.land...@gmail.com<mailto:greg.land...@gmail.com>]
Gesendet: Mittwoch, 5. Juli 2017 05:44
An: Paul Czodrowski <paul.czodrow...@merckgroup.com<http://merckgroup.com>>
Cc: rdkit
<rdkit-discuss@lists.sourceforge.net<mailto:rdkit-discuss@lists.sourceforge.net>>
Betreff: Re: [Rdkit-discuss] rdkit&pillow
Hi Paul,
The small bit of sample code below and the error message make no mention of
Pillow, did you forget something in your message?
(the error that's there looks like a standard PATH problem, the kind one
normally doesn't have while using conda)
-greg
On Tue, Jul 4, 2017 at 10:15 PM, Paul Czodrowski
<paul.czodrow...@merckgroup.com<mailto:paul.czodrow...@merckgroup.com>> wrote:
Dear RDkitters,
I hope not to bother anyone of you with a pillow-related question, but I’m
facing issues when running this:
from rdkit import Chem
from rdkit.Chem.Draw import IPythonConsole
from rdkit.Chem import AllChem
==>
---------------------------------------------------------------------------
ImportError Traceback (most recent call last)
<ipython-input-1-7bccf021c897> in <module>()
----> 1 from rdkit import Chem
2 from rdkit.Chem.Draw import IPythonConsole
3 from rdkit.Chem import AllChem
c:\users\m163729\appdata\local\continuum\anaconda2\envs\rdkit_env\lib\site-packages\rdkit\__init__.py
in <module>()
1 try:
----> 2 from .rdBase import rdkitVersion as __version__
3 except ImportError:
4 __version__ = 'Unknown'
5 raise
ImportError: DLL load failed: Das angegebene Modul wurde nicht gefunden.
Sorry for the German message, but I hope that everyone is getting this error…
conda list pillow
Shows the following:
pillow 4.2.0 py27_0
Prior to the conda installation of pillow, rdkit was running properly..
Any help would be highly appreciated! (but don’t comment like: “please use
another OS than Windows”)
Cheers,
Paul
________________________________________
Paul Czodrowski, PhD
Global Research & Development | Discovery Technologies
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