Hi Paul,
when using pillow and Python 2 I recommend to also install pycairo
(avail. via conda install).
For Python 3 you would need cairo from conda and cairocffi from pip.
(http://rdkit.org/docs/Install.html#recommended-extras)
Kind regards,
Axel
On 05.07.2017 08:09, Paul Czodrowski wrote:
Dear Greg (and RDKitters),
good news is: I just re-ran “conda install -c rdkit rdkit”, and at
least rdkit is working properly.
“import pillow” still does not work.
This is the output of “conda list”:
backports-abc 0.5 <pip>
backports.shutil-get-terminal-size 1.0.0 <pip>
bleach 2.0.0 <pip>
boost 1.56.0 py27_3 rdkit
bzip2 1.0.6 vc9_3 [vc9]
certifi 2017.4.17 <pip>
colorama 0.3.9 <pip>
configparser 3.5.0 <pip>
decorator 4.0.11 <pip>
entrypoints 0.2.3 <pip>
enum34 1.1.6 <pip>
freetype 2.5.5 vc9_2 [vc9]
functools32 3.2.3.post2 <pip>
html5lib 0.999999999 <pip>
idisplay 0.1.2 <pip>
ipykernel 4.6.1 <pip>
ipython 5.4.1 <pip>
ipython-genutils 0.2.0 <pip>
ipywidgets 6.0.0 <pip>
Jinja2 2.9.6 <pip>
jpeg 9b vc9_0 [vc9]
jsonschema 2.6.0 <pip>
jupyter 1.0.0 <pip>
jupyter-client 5.0.1 <pip>
jupyter-console 5.1.0 <pip>
jupyter-core 4.3.0 <pip>
libpng 1.6.27 vc9_0 [vc9]
libtiff 4.0.6 vc9_3 [vc9]
MarkupSafe 1.0 <pip>
mistune 0.7.4 <pip>
mkl 2017.0.1 0
nbconvert 5.2.1 <pip>
nbformat 4.3.0 <pip>
notebook 5.0.0 <pip>
numpy 1.11.3 py27_0
olefile 0.44 py27_0
pandas 0.20.1 np111py27_0
pandocfilters 1.4.1 <pip>
pathlib2 2.2.1 <pip>
pickleshare 0.7.4 <pip>
pillow 4.2.0 py27_0
pip 9.0.1 py27_1
prompt-toolkit 1.0.14 <pip>
py3Dmol 0.6.3 <pip>
Pygments 2.2.0 <pip>
python 2.7.13 1
python-dateutil 2.6.0 <pip>
python-dateutil 2.6.0 py27_0
pytz 2017.2 py27_0
pyzmq 16.0.2 <pip>
qtconsole 4.3.0 <pip>
scandir 1.5 <pip>
setuptools 27.2.0 py27_1
setuptools 36.0.1 <pip>
simplegeneric 0.8.1 <pip>
singledispatch 3.4.0.3 <pip>
six 1.10.0 py27_0
six 1.10.0 <pip>
testpath 0.3.1 <pip>
tornado 4.5.1 <pip>
traitlets 4.3.2 <pip>
vs2008_runtime 9.00.30729.5054 0
wcwidth 0.1.7 <pip>
webencodings 0.5.1 <pip>
wheel 0.29.0 py27_0
widgetsnbextension 2.0.0 <pip>
win-unicode-console 0.5 <pip>
zlib 1.2.8 vc9_3 [vc9]
Best regards,
Paul
*Von:*Greg Landrum [mailto:greg.land...@gmail.com]
*Gesendet:* Mittwoch, 5. Juli 2017 06:33
*An:* Paul Czodrowski <paul.czodrow...@merckgroup.com>
*Cc:* rdkit <rdkit-discuss@lists.sourceforge.net>
*Betreff:* Re: [Rdkit-discuss] rdkit&pillow
The fact that "import pillow" doesn't work is very suspicious.
Can you please be sure that pillow and the rdkit are both installed in
the active environment by executing:
"conda list"
On Wed, Jul 5, 2017 at 5:50 AM, Paul Czodrowski
<paul.czodrow...@merckgroup.com
<mailto:paul.czodrow...@merckgroup.com>> wrote:
Dear Greg (and RDKitters),
before it came to this error message, the conda installation of
rdkit was running properly.
I then did a “conda install pillow” in this conda installation,
which now results in this error.
BTW, “import pillow” shows:
ImportErrorTraceback (most recent call last)
<ipython-input-1-9eebacc5895b>in <module>()
----> 1importpillow
ImportError: No module named pillow
“import rdkit” gives:
---------------------------------------------------------------------------
ImportErrorTraceback (most recent call last)
<ipython-input-2-e537e29c64f4>in <module>()
----> 1importrdkit
c:\users\m163729\appdata\local\continuum\anaconda2\envs\rdkit_env\lib\site-packages\rdkit\__init__.pyin
<module>()
1try:
----> 2from.rdBase importrdkitVersion as__version__
3exceptImportError:
4 __version__ ='Unknown'
5raise
ImportError: DLL load failed: Das angegebene Modul wurde nicht
gefunden.
BZW, “import PIL” works without any problems.
It does not make sense to me that a simple “conda install pillow”
screws up the entire rdkit installion (I have never faced this
before, at least when using several Linux boxes).
Cheers,
Paul
*Von:*Greg Landrum [mailto:greg.land...@gmail.com
<mailto:greg.land...@gmail.com>]
*Gesendet:* Mittwoch, 5. Juli 2017 05:44
*An:* Paul Czodrowski <paul.czodrow...@merckgroup.com
<http://merckgroup.com>>
*Cc:* rdkit <rdkit-discuss@lists.sourceforge.net
<mailto:rdkit-discuss@lists.sourceforge.net>>
*Betreff:* Re: [Rdkit-discuss] rdkit&pillow
Hi Paul,
The small bit of sample code below and the error message make no
mention of Pillow, did you forget something in your message?
(the error that's there looks like a standard PATH problem, the
kind one normally doesn't have while using conda)
-greg
On Tue, Jul 4, 2017 at 10:15 PM, Paul Czodrowski
<paul.czodrow...@merckgroup.com
<mailto:paul.czodrow...@merckgroup.com>> wrote:
Dear RDkitters,
I hope not to bother anyone of you with a pillow-related
question, but I’m facing issues when running this:
from rdkit import Chem
from rdkit.Chem.Draw import IPythonConsole
from rdkit.Chem import AllChem
è
---------------------------------------------------------------------------
ImportErrorTraceback (most recent call last)
<ipython-input-1-7bccf021c897>in <module>()
----> 1fromrdkit importChem
2fromrdkit.Chem.Draw importIPythonConsole
3fromrdkit.Chem importAllChem
c:\users\m163729\appdata\local\continuum\anaconda2\envs\rdkit_env\lib\site-packages\rdkit\__init__.pyin
<module>()
1try:
----> 2from.rdBase importrdkitVersion as__version__
3exceptImportError:
4__version__ ='Unknown'
5raise
ImportError: DLL load failed: Das angegebene Modul wurde nicht
gefunden.
Sorry for the German message, but I hope that everyone is
getting this error…
conda list pillow
Shows the following:
pillow 4.2.0 py27_0
Prior to the conda installation of pillow, rdkit was running
properly..
Any help would be highly appreciated! (but don’t comment like:
“please use another OS than Windows”)
Cheers,
Paul
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