Author: bugman
Date: Mon Dec 14 16:59:24 2015
New Revision: 28146
URL: http://svn.gna.org/viewcvs/relax?rev=28146&view=rev
Log:
Updated the relax HTML manual at http://www.nmr-relax.com/manual/index.html to
version 4.0.1.
Added:
website/manual/structure_pca.html
Modified:
website/manual/A_warning_about_the_formatting.html
website/manual/Abbreviations.html
website/manual/About_this_document.html
website/manual/Access_to_the_internals_of_relax.html
website/manual/Advanced_topics.html
website/manual/All_model_free_models_script_mode_explanation.html
website/manual/All_model_free_models_script_mode_the_sample_script.html
website/manual/Alphabetical_listing_of_user_functions.html
website/manual/Analysing_dispersion_in_the_prompt_script_UI_mode.html
website/manual/Assigning_an_issue_to_yourself.html
website/manual/Becoming_a_committer.html
website/manual/Bibliography.html
website/manual/Branch_creation.html
website/manual/Branches.html
website/manual/Brownian_rotational_diffusion.html
website/manual/C_module_compilation.html
website/manual/Calculating_the_NOE.html
website/manual/Calculation_of_the_NOE_in_the_prompt_script_UI_mode.html
website/manual/Cleaning_up.html
website/manual/Closing_an_issue.html
website/manual/Coding_conventions.html
website/manual/Comments.html
website/manual/Committers.html
website/manual/Comparison_of_dispersion_analysis_software.html
website/manual/Compilation_of_the_API_documentation_HTML_version.html
website/manual/Compilation_of_the_user_manual_HTML_version.html
website/manual/Compilation_of_the_user_manual_PDF_version.html
website/manual/Components_of_the_Ri_theta_equations.html
website/manual/Computation_time_and_the_numerical_integration_of_the_PCS.html
website/manual/Computation_times.html
website/manual/Conjugate_gradient_methods.html
website/manual/Consistency_testing.html
website/manual/Consistency_testing_analysis_references.html
website/manual/Consistency_testing_in_the_prompt_script_UI_mode.html
website/manual/Consistency_testing_script_mode_calculation_and_error_propagation.html
website/manual/Consistency_testing_script_mode_data_pipe_and_spin_system_setup.html
website/manual/Consistency_testing_script_mode_relaxation_data_loading.html
website/manual/Consistency_testing_script_mode_relaxation_interactions.html
website/manual/Consistency_testing_script_mode_the_sample_script.html
website/manual/Consistency_testing_script_mode_visualisation_and_data_output.html
website/manual/Constraint_algorithms.html
website/manual/Construction_of_the_Hessian.html
website/manual/Construction_of_the_gradient.html
website/manual/Construction_of_the_values_gradients_and_Hessians.html
website/manual/Contents.html
website/manual/Copying_modification_sublicencing_and_distribution_of_relax.html
website/manual/Dasha.html
website/manual/Data_analysis_tools.html
website/manual/Data_visualisation.html
website/manual/Defaults.html
website/manual/Dependencies.html
website/manual/Derivation_of_a_2D_trigonometric_function_the_pseudo_elliptic_cosine.html
website/manual/Determining_stereochemistry_in_dynamic_molecules.html
website/manual/Diagonal_scaling.html
website/manual/Discussing_major_changes.html
website/manual/Dispersion_GUI_mode_choosing_the_models_to_optimise.html
website/manual/Dispersion_GUI_mode_comparing_models.html
website/manual/Dispersion_GUI_mode_comparison_of_the_analyses.html
website/manual/Dispersion_GUI_mode_computation_time.html
website/manual/Dispersion_GUI_mode_dispersion_setup.html
website/manual/Dispersion_GUI_mode_execution_of_the_non_clustered_analysis.html
website/manual/Dispersion_GUI_mode_general_setup.html
website/manual/Dispersion_GUI_mode_initialisation_of_the_data_pipe.html
website/manual/Dispersion_GUI_mode_inspection_of_the_results.html
website/manual/Dispersion_GUI_mode_loading_the_data.html
website/manual/Dispersion_GUI_mode_optimisation_settings.html
website/manual/Dispersion_GUI_mode_setting_up_the_spin_systems.html
website/manual/Dispersion_GUI_mode_the_clustered_analysis.html
website/manual/Dispersion_GUI_mode_two_analyses.html
website/manual/Dispersion_GUI_mode_unresolved_spins.html
website/manual/Dispersion_curve_insignificance.html
website/manual/Dispersion_model_summary.html
website/manual/Dispersion_parameter_grid_search.html
website/manual/Dispersion_parameter_optimisation.html
website/manual/Dispersion_script_mode_analysis_variables.html
website/manual/Dispersion_script_mode_execution.html
website/manual/Dispersion_script_mode_imports.html
website/manual/Dispersion_script_mode_initialisation_of_the_data_pipe.html
website/manual/Dispersion_script_mode_loading_the_data.html
website/manual/Dispersion_script_mode_setting_up_the_spin_systems.html
website/manual/Dispersion_script_mode_the_rest_of_the_setup.html
website/manual/Dispersion_script_mode_the_sample_script.html
website/manual/Doc_strings.html
website/manual/Docstring_sectioning.html
website/manual/Double_pivoted_motions.html
website/manual/Double_rotor_equations.html
website/manual/Double_rotor_frame_order_model.html
website/manual/Double_rotor_parameterisation.html
website/manual/Ellipsoidal_diffusion_tensor.html
website/manual/Ellipsoidal_dot_product_derivatives.html
website/manual/Error_analysis.html
website/manual/Experimental_data_support_for_the_N_state_model.html
website/manual/Final_checks_of_the_curve_fitting.html
website/manual/Format_of_the_commit_logs.html
website/manual/Frame_order.html
website/manual/Frame_order_and_the_alignment_tensor.html
website/manual/Frame_order_axis_permutations.html
website/manual/Frame_order_in_rotational_Brownian_diffusion_and_NMR_relaxation.html
website/manual/Frame_order_model_nesting.html
website/manual/Frame_order_modelling.html
website/manual/Frame_order_theory.html
website/manual/Free_rotor_equations.html
website/manual/Free_rotor_frame_order_model.html
website/manual/Free_rotor_isotropic_cone_equations.html
website/manual/Free_rotor_isotropic_cone_frame_order_model.html
website/manual/Free_rotor_isotropic_cone_parameterisation.html
website/manual/Free_rotor_parameterisation.html
website/manual/Free_rotor_pseudo_ellipse_equations.html
website/manual/Free_rotor_pseudo_ellipse_frame_order_model.html
website/manual/Free_rotor_pseudo_ellipse_parameterisation.html
website/manual/From_spectra_to_peak_intensities_for_the_NOE.html
website/manual/From_spectra_to_peak_intensities_for_the_relaxation_rates.html
website/manual/Further_details.html
website/manual/GUI_mode_deselect_spins.html
website/manual/GUI_mode_manual_construction.html
website/manual/GUI_mode_setting_up_the_data_pipe.html
website/manual/GUI_mode_spins_from_a_sequence_file.html
website/manual/GUI_mode_spins_from_structural_data.html
website/manual/Generic_parts_of_relax.html
website/manual/Grace.html
website/manual/Graphical_user_interface_reference.html
website/manual/Hessian_modifications.html
website/manual/How_to_use_relax.html
website/manual/Implementation.html
website/manual/Implemented_models.html
website/manual/Indentation.html
website/manual/Index.html
website/manual/Installation.html
website/manual/Installation_instructions.html
website/manual/Installation_on_GNU_Linux.html
website/manual/Installation_on_MS_Windows.html
website/manual/Installation_on_Mac_OS_X.html
website/manual/Installation_on_your_OS.html
website/manual/Interatomic_data_containers.html
website/manual/Interfacing_with_other_programs.html
website/manual/Introduction.html
website/manual/Introduction_of_frame_ordering.html
website/manual/Introduction_to_frame_order_data_analysis.html
website/manual/Introduction_to_reduced_spectral_density_mapping.html
website/manual/Introduction_to_relaxation_curve_fitting.html
website/manual/Introduction_to_relaxation_dispersion.html
website/manual/Introduction_to_the_N_state_model.html
website/manual/Introduction_to_the_consistency_testing_of_relaxation_data.html
website/manual/Introduction_to_the_mathematics_behind_the_optimisation_of_relaxation_data.html
website/manual/Introduction_to_the_multi_processor.html
website/manual/Introduction_to_the_steady_state_NOE.html
website/manual/Isotropic_cone_equations.html
website/manual/Isotropic_cone_frame_order_model.html
website/manual/Isotropic_cone_parameterisation.html
website/manual/J_w_mapping_script_mode_calculation_and_error_propagation.html
website/manual/J_w_mapping_script_mode_data_pipe_and_spin_system_setup.html
website/manual/J_w_mapping_script_mode_relaxation_data_loading.html
website/manual/J_w_mapping_script_mode_relaxation_interactions.html
website/manual/J_w_mapping_script_mode_the_sample_script.html
website/manual/J_w_mapping_script_mode_visualisation_and_data_output.html
website/manual/Joining_Gna.html
website/manual/Joining_the_relax_project.html
website/manual/Keeping_the_branch_up_to_date_using_svnmerge_py.html
website/manual/Latest_sources_the_relax_repositories.html
website/manual/Licence.html
website/manual/Line_search_methods.html
website/manual/Linear_constraints_for_the_frame_order_models.html
website/manual/Links_links_and_more_links.html
website/manual/List_of_Figures.html
website/manual/List_of_Tables.html
website/manual/Literature.html
website/manual/Ln3_aligned_RDC_and_PCS_data.html
website/manual/Logarithmic_barrier_constraint_algorithm.html
website/manual/Making_distribution_archives.html
website/manual/Measuring_peak_intensities.html
website/manual/Merging_the_branch_back_into_the_main_line.html
website/manual/Method_of_Multipliers_algorithm.html
website/manual/Model_free_analysis.html
website/manual/Model_free_analysis_in_reverse.html
website/manual/Model_free_analysis_references.html
website/manual/Model_free_model_selection.html
website/manual/Model_free_model_selection_script_mode_explanation.html
website/manual/Model_free_model_selection_script_mode_the_sample_script.html
website/manual/Model_free_optimisation_theory.html
website/manual/Model_free_theory.html
website/manual/Model_selection_references.html
website/manual/Modelfree4.html
website/manual/Modification_of_official_releases_creating_patches_with_diff.html
website/manual/Modification_of_the_latest_sources_creating_patches_with_Subversion.html
website/manual/Molecule_residue_and_spin_containers.html
website/manual/Molmol.html
website/manual/Monte_Carlo_simulation_elimination.html
website/manual/NOE_GUI_mode_general_setup.html
website/manual/NOE_GUI_mode_initialisation_of_the_data_pipe.html
website/manual/NOE_GUI_mode_loading_the_data.html
website/manual/NOE_GUI_mode_setting_up_the_spin_systems.html
website/manual/NOE_GUI_mode_the_NOE_calculation.html
website/manual/NOE_GUI_mode_unresolved_spins.html
website/manual/NOE_script_mode_initialisation_of_the_data_pipe.html
website/manual/NOE_script_mode_loading_the_data.html
website/manual/NOE_script_mode_setting_the_errors.html
website/manual/NOE_script_mode_setting_up_the_spin_systems.html
website/manual/NOE_script_mode_the_NOE_calculation.html
website/manual/NOE_script_mode_the_sample_script.html
website/manual/NOE_script_mode_unresolved_spins.html
website/manual/NOE_script_mode_viewing_the_results.html
website/manual/NOEs_in_the_N_state_model.html
website/manual/N_state_model_analysis_references.html
website/manual/Navigation.html
website/manual/News.html
website/manual/Numerical_integration_techniques.html
website/manual/OpenDX.html
website/manual/Open_source_infrastructure.html
website/manual/Optimisation.html
website/manual/Optimisation_algorithms.html
website/manual/Optimisation_equations_for_the_model_free_analysis.html
website/manual/Optimisation_of_a_single_model_free_model.html
website/manual/Optimisation_of_all_model_free_models.html
website/manual/Optimisation_of_relaxation_data_values_gradients_and_Hessians.html
website/manual/Optimisation_of_the_diffusion_tensor_parameters.html
website/manual/Optimisation_of_the_frame_order_models.html
website/manual/Optimisation_of_the_global_model.html
website/manual/Optimisation_of_the_local_tau_m_models.html
website/manual/Optimisation_of_the_model_free_models.html
website/manual/Optional_programs.html
website/manual/Other_citations.html
website/manual/Other_methods.html
website/manual/PCS_subset.html
website/manual/PCSs_in_the_N_state_model.html
website/manual/Parallelization_and_running_on_a_cluster.html
website/manual/Power_users.html
website/manual/Preface_citing_relax.html
website/manual/Private_vs_public_messages.html
website/manual/Program_features.html
website/manual/Pseudo_ellipse_equations.html
website/manual/Pseudo_ellipse_frame_order_model.html
website/manual/Pseudo_ellipse_parameterisation.html
website/manual/PyMOL.html
website/manual/Python.html
website/manual/RDCs_in_the_N_state_model.html
website/manual/Reduced_spectral_density_mapping.html
website/manual/Reduced_spectral_density_mapping_references.html
website/manual/Reference.html
website/manual/Relax_fit_GUI_mode_general_setup.html
website/manual/Relax_fit_GUI_mode_initialisation_of_the_data_pipe.html
website/manual/Relax_fit_GUI_mode_loading_the_data.html
website/manual/Relax_fit_GUI_mode_optimisation_and_error_analysis.html
website/manual/Relax_fit_GUI_mode_setting_up_the_spin_systems.html
website/manual/Relax_fit_GUI_mode_unresolved_spins.html
website/manual/Relax_fit_script_mode_error_analysis.html
website/manual/Relax_fit_script_mode_finishing_off.html
website/manual/Relax_fit_script_mode_initialisation_of_the_data_pipe.html
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website/manual/Relax_fit_script_mode_optimisation_of_exponential_curves.html
website/manual/Relax_fit_script_mode_setting_up_the_spin_systems.html
website/manual/Relax_fit_script_mode_the_rest_of_the_setup.html
website/manual/Relax_fit_script_mode_the_sample_script.html
website/manual/Relaxation_curve_fitting.html
website/manual/Relaxation_curve_fitting_in_the_prompt_script_UI_mode.html
website/manual/Relaxation_dispersion.html
website/manual/Relaxation_dispersion_diagonal_scaling.html
website/manual/Relaxation_dispersion_model_elimination.html
website/manual/Relaxation_dispersion_on_a_computer_cluster_using_OpenMPI.html
website/manual/Relaxation_dispersion_optimisation_theory.html
website/manual/Relaxation_dispersion_parameter_constraints.html
website/manual/Relaxation_dispersion_references.html
website/manual/Replying_to_a_message.html
website/manual/Reporting_bugs.html
website/manual/Ri_theta_Hessians.html
website/manual/Ri_theta_gradients.html
website/manual/Ri_theta_values.html
website/manual/Ri_theta_values_gradients_and_Hessians.html
website/manual/Rigid_body_motions_for_a_two_domain_system.html
website/manual/Rigid_frame_order_model.html
website/manual/Rigid_model_equations.html
website/manual/Rigid_model_parameterisation.html
website/manual/Rotor_equations.html
website/manual/Rotor_frame_order_model.html
website/manual/Rotor_parameterisation.html
website/manual/Running_a_non_compiled_version.html
website/manual/SCons_help.html
website/manual/Script_mode_manual_construction.html
website/manual/Script_mode_spins_from_a_sequence_file.html
website/manual/Script_mode_spins_from_structural_data.html
website/manual/Scripting.html
website/manual/Search_engine_indexing.html
website/manual/Setup_in_the_GUI.html
website/manual/Setup_in_the_prompt_script_UI.html
website/manual/Simulation_of_the_frame_order_models.html
website/manual/Single_model_free_model_script_mode_explanation.html
website/manual/Single_model_free_model_script_mode_the_sample_script.html
website/manual/Single_pivoted_motions.html
website/manual/Specific_analyses.html
website/manual/Spectral_processing.html
website/manual/Spherical_diffusion_tensor.html
website/manual/Spheroidal_diffusion_tensor.html
website/manual/Spheroidal_dot_product_derivatives.html
website/manual/Stereochemistry_the_auto_analysis.html
website/manual/Stereochemistry_the_sample_script.html
website/manual/Submitting_a_bug_report.html
website/manual/Submitting_changes_as_a_patch.html
website/manual/Submitting_changes_to_the_relax_project.html
website/manual/Supported_NMR_theories.html
website/manual/Tab_completion.html
website/manual/Temperature_control_and_calibration.html
website/manual/Tensors_of_frame_ordering.html
website/manual/The_DPL94_2_site_fast_exchange_R1_rho_model.html
website/manual/The_GPL.html
website/manual/The_GUI.html
website/manual/The_Hessian.html
website/manual/The_IT99_2_site_CPMG_model.html
website/manual/The_LM63_2_site_fast_exchange_CPMG_model.html
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website/manual/The_M61_skew_2_site_fast_exchange_R1_rho_model.html
website/manual/The_MMQ_CR72_model.html
website/manual/The_MP05_2_site_exchange_R1_rho_model.html
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website/manual/The_R2eff_model.html
website/manual/The_Ri_theta_Hessians.html
website/manual/The_Ri_theta_gradients.html
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website/manual/The_TP02_2_site_exchange_R1_rho_model.html
website/manual/The_TSMFK01_2_site_CPMG_model.html
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website/manual/The_alternative_extended_model_free_gradient.html
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website/manual/The_analytic_MMQ_CPMG_models.html
website/manual/The_analytic_R1_rho_models.html
website/manual/The_base_dispersion_models.html
website/manual/The_basics.html
website/manual/The_bug_task_and_support_request_trackers.html
website/manual/The_chi_2_Hessian.html
website/manual/The_chi_2_gradient.html
website/manual/The_chi_2_value.html
website/manual/The_chi_2_value_gradient_and_Hessian.html
website/manual/The_chi_squared_function_chi_2_theta.html
website/manual/The_clustered_relaxation_dispersion_analysis.html
website/manual/The_concept_of_the_relax_data_model.html
website/manual/The_core_design_of_relax.html
website/manual/The_correlation_time_Hessian_of_the_sphere.html
website/manual/The_correlation_time_Hessians_of_the_ellipsoid.html
website/manual/The_correlation_time_Hessians_of_the_spheroid.html
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