Hi Sam. Can you try: mpirun --version
Thanks 2016-10-01 0:00 GMT+02:00 Mahdi, Sam <sam.mahdi....@my.csun.edu>: > Hi Troels, > > Here is a list of the packages I got off of the fedora package list > Openmpi: > openmpi-1.7.3-1.fc.20(64-bit) > openmpi-devel-1.7.3-1.fc20(64bit) > pypar-openmpi-2.1.5_108_3.fc.20(64bit) > python3-mpi4py-1.3.1-1.fc20(64bit) > > Mpi4py > mpi4py-common-1.3.1-1.fc20 > mpi4py-mpich-1.3.1-1.fc20 > mpi4py-openmpi-1.3.1-1.fc20 > python3-mpi4py-mpich-1.3.1-1.fc20 > python3-mpi4py-openmpi-1.3.1-1.fc20 > > Note: I now know the mpich is extra and pointless. I only use the openmpi > when I load my modules. I have not compiled or configured anything with > these packages. I just installed them directly from the package list. If > you need any more info on what is installed on these computers let me know! > > Sincerely, > Sam > > > On Fri, Sep 30, 2016 at 2:23 PM, Troels Emtekær Linnet < > tlin...@nmr-relax.com> wrote: > >> Hi Sam. >> >> I am trying to setup myself on Google Cloud Platform. >> >> Here I setting up for a Redhat 6 distro, in hope it gets close to Fedora >> 20. >> >> I am currently making a deployment script. >> >> The process is written here: >> http://wiki.nmr-relax.com/Run_relax_at_Google_Cloud_Computin >> g#Install_packages_at_server >> >> But that is a little old, since the configurations has changed a little >> since 2015. >> And the last deployment script is for Ubuntu. >> >> Getting the packages right is a pain.... ;) >> >> Let me return when I know some more. >> >> >> >> 2016-09-30 23:03 GMT+02:00 Mahdi, Sam <sam.mahdi....@my.csun.edu>: >> >>> Hi Troels, >>> >>> I attempted the full path >>> mpirun -np 5 ~/relax-4.0.2/relax --multi="mpi4py" -v >>> and still got the same result. No output. >>> >>> Sincerely, >>> Sam >>> >>> On Fri, Sep 30, 2016 at 11:43 AM, Troels Emtekær Linnet < >>> tlin...@nmr-relax.com> wrote: >>> >>>> Hi Sam. >>>> >>>> Hm. Alright. >>>> >>>> But to rule it out in my head, can you try this: >>>> >>>> mpirun -np 5 /home/users/software/relax-4.0.2/relax --multi="mpi4py" -v >>>> >>>> Or similar destination path. >>>> But please try the full path. >>>> >>>> Best >>>> Troels >>>> >>>> 2016-09-30 19:47 GMT+02:00 Mahdi, Sam <sam.mahdi....@my.csun.edu>: >>>> >>>>> I get the same results with the full path mpirun -np 5 >>>>> ~/relax-4.0.2/relax --multi="mpi4py" -v >>>>> Still no output. >>>>> >>>>> Sincerely, >>>>> Sam >>>>> >>>>> On Fri, Sep 30, 2016 at 10:39 AM, Troels Emtekær Linnet < >>>>> tlin...@nmr-relax.com> wrote: >>>>> >>>>>> Sam. >>>>>> >>>>>> All points to: >>>>>> "./relax" is NOT calling relax in the current folder. >>>>>> >>>>>> It is because the command "mpirun" is running it. >>>>>> >>>>>> Please provide the FULL path to relax. >>>>>> >>>>>> I think I have written this before. ;) >>>>>> >>>>>> Best >>>>>> Troels >>>>>> >>>>>> >>>>>> 2016-09-30 19:24 GMT+02:00 Mahdi, Sam <sam.mahdi....@my.csun.edu>: >>>>>> >>>>>>> Sorry, you're right, I re-ran the mpirun -np 5 ./relax >>>>>>> --multi="mpi4py" -v >>>>>>> and got no output. So I'm just curious for the other computers I >>>>>>> download >>>>>>> openmpi in, just installing it and compiling it isn't enough? There >>>>>>> are >>>>>>> some configurations you have to make to have it run on relax? >>>>>>> >>>>>>> Sincerely, >>>>>>> Sam >>>>>>> >>>>>>> On Fri, Sep 30, 2016 at 10:17 AM, Edward d'Auvergne < >>>>>>> edw...@nmr-relax.com> >>>>>>> wrote: >>>>>>> >>>>>>> > On 30 September 2016 at 19:12, Mahdi, Sam < >>>>>>> sam.mahdi....@my.csun.edu> >>>>>>> > wrote: >>>>>>> > > Hi Edward, >>>>>>> > > >>>>>>> > > So I ran the the mpirun commands you suggested. The echo world >>>>>>> works >>>>>>> > fine. I >>>>>>> > > get the same results you did. For the relax one, this is the >>>>>>> output I >>>>>>> > > recieved >>>>>>> > > [~/relax-4.0.2]> mpirun -np 5 ./relax --multi="mpi4py" -v relax >>>>>>> 4.0.2 >>>>>>> > > Usage: relax [options] [script_file] >>>>>>> > > >>>>>>> > > RelaxError: incorrect number of arguments >>>>>>> > >>>>>>> > Have a close look at my original text: >>>>>>> > >>>>>>> > [edward@localhost ~]$ mpirun -np 5 /data/relax/tags/4.0.2/relax >>>>>>> > --multi="mpi4py" -v >>>>>>> > relax 4.0.2 >>>>>>> > [edward@localhost ~]$ >>>>>>> > >>>>>>> > Note how "relax 4.0.2" is on a different line - that is the relax >>>>>>> > output, not the command line input. Try again without that text. >>>>>>> > >>>>>>> > >>>>>>> > > RelaxError: ambiguous option: --v (--verification-tests, >>>>>>> --version?) >>>>>>> > >>>>>>> > This is because the double-dash to single-dash conversion is only >>>>>>> in >>>>>>> > the HTML version of the relax manual, and not emails. Run "relax >>>>>>> -h" >>>>>>> > to see a description of this option. >>>>>>> > >>>>>>> > >>>>>>> > > Also, the reason its ./relax is because I have relax 2.2.5 >>>>>>> installed, >>>>>>> > and I >>>>>>> > > have that set up as an Alias, so if I just type relax, it'll >>>>>>> open up >>>>>>> > relax >>>>>>> > > 2.2.5. So I went to the actual relax-4.0.2. directory instead of >>>>>>> > indicating >>>>>>> > > its path and just typed ./relax. (By I, I mean the administrator >>>>>>> of this >>>>>>> > > computer, I do not have root access to this computer). >>>>>>> > >>>>>>> > You should set your alias to the relax-4.0.2 version instead. The >>>>>>> > 2.2.5 version is very, very old, and many bugs have been fixed >>>>>>> since >>>>>>> > then. >>>>>>> > >>>>>>> > Regards, >>>>>>> > >>>>>>> > Edward >>>>>>> > >>>>>>> _______________________________________________ >>>>>>> relax (http://www.nmr-relax.com) >>>>>>> >>>>>>> This is the relax-users mailing list >>>>>>> relax-users@gna.org >>>>>>> >>>>>>> To unsubscribe from this list, get a password >>>>>>> reminder, or change your subscription options, >>>>>>> visit the list information page at >>>>>>> https://mail.gna.org/listinfo/relax-users >>>>>>> >>>>>> >>>>>> >>>>> >>>> >>> >> > _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-users mailing list relax-users@gna.org To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
