Hi Sam. I know your problem. :) It is the same for me. Getting hang of a system admin for our lab computers, and then to convince him/her to fix stuff is not easy.
Thats why I test on Google Cloud. There I can get access to a multi core computer, and mess with it. But it only has a set of standard images. And Fedora is not one of them. But we can try to have a look at your personal shell setup. Can you display your login script?: One of these should be the right one. --- cat $HOME/.cshrc cat $HOME/.login, cat $HOME/.tcshrc --- And now try as well: --- alias get 'set noglob; wget http://svn.gna.org/viewcvs/*checkout*/relax/trunk/devel_scripts/openmpi_test_install_tcsh.sh;unset noglob' get # Source functions source openmpi_test_install_tcsh.sh testopenmpi ----- 2016-10-03 18:13 GMT+02:00 Mahdi, Sam <sam.mahdi....@my.csun.edu>: > Hi Troels, > > It will be a bit difficult for me to attempt to update, remove, or install > any packages since I am not root user, which means I'd have to wait for my > PI to come and install/remove packages or programs. Anything regarding > installing programs on a user basis I can do (such as installing relax), > but I can not for example, install mpi4py. I can download it, untar it, > even compile it using the mpicc wrapper, but I cannot install it. I know we > discussed the potential problem could be because I have 2 version of relax > on my system. Could you try to potentially download another version of > relax (the other one I have is 2.2.5) and the older version of openmpi, and > attempt to run it then? It would be a lot easier for me to directly tell my > PI to simply remove a file, or update one, then to attempt to troubleshoot > with them. > > Sincerely, > Sam > > On Mon, Oct 3, 2016 at 8:58 AM, Troels Emtekær Linnet < > tlin...@nmr-relax.com> wrote: > >> Hi Sam. >> >> I can get relax to run and work on redhat/centos version 6. >> >> I have updated a deployment script for this: >> http://wiki.nmr-relax.com/Run_relax_at_Google_Cloud_Computin >> g#Install_packages_at_server >> >> Please have a look here: >> http://svn.gna.org/viewcvs/relax/trunk/devel_scripts/deploy_scripts/ >> >> and specific: >> http://svn.gna.org/viewcvs/*checkout*/relax/trunk/devel_scri >> pts/deploy_scripts/deploy_google_computing_redhat_6_86_x64_ >> upgrade_python.sh?content-type=text%2Fplain >> >> This is for centos 6, which should get very close to fedora 20. >> >> For centos 6, the openmpi is version 1.8. And you have 1.7.3 >> >> So, the only difference I can see is the openmpi version. >> Can you upgrade this? >> >> ------ >> [tlinnet@instance-1 ~]$ relax_4.0.2 -i >> >> >> >> relax 4.0.2 >> >> Molecular dynamics by NMR data analysis >> >> Copyright (C) 2001-2006 Edward d'Auvergne >> Copyright (C) 2006-2016 the relax development >> team >> >> This is free software which you are welcome to modify and redistribute >> under the conditions of the >> GNU General Public License (GPL). This program, including all modules, >> is licensed under the GPL >> and comes with absolutely no warranty. For details type 'GPL' within the >> relax prompt. >> >> Assistance in using the relax prompt and scripting interface can be >> accessed by typing 'help' within >> the prompt. >> >> Processor fabric: Uni-processor. >> >> >> Hardware information: >> Machine: x86_64 >> Processor: x86_64 >> Processor name: Intel(R) Xeon(R) CPU @ 2.50GHz >> Endianness: little >> Total RAM size: 3426 Mb >> Total swap size: 0 Mb >> >> Operating system information: >> System: Linux >> Release: 2.6.32-642.4.2.el6.x86_64 >> Version: #1 SMP Tue Aug 23 19:58:13 UTC 2016 >> GNU/Linux version: CentOS 6.8 Final >> Distribution: centos 6.8 Final >> Full platform string: Linux-2.6.32-642.4.2.el6.x86_ >> 64-x86_64-with-centos-6.8-Final >> >> Python information: >> Architecture: 64bit ELF >> Python version: 2.7.8 >> Python branch: >> Python build: default, May 15 2016 12:46:09 >> Python compiler: GCC 4.4.7 20120313 (Red Hat 4.4.7-16) >> Libc version: glibc 2.2.5 >> Python implementation: CPython >> Python revision: >> Python executable: /opt/rh/python27/root/usr/bin/python >> Python flags: sys.flags(debug=0, py3k_warning=0, >> division_warning=0, division_new=0, inspect=0, interactive=0, optimize=0, >> dont_write_bytecode=0, no_user_site=0, no_site=0, ignore_environment=0, >> tabcheck=0, verbose=0, unicode=0, bytes_warning=0, hash_randomization=0) >> Python float info: sys.float_info(max=1.7976931348623157e+308, >> max_exp=1024, max_10_exp=308, min=2.2250738585072014e-308, min_exp=-1021, >> min_10_exp=-307, dig=15, mant_dig=53, epsilon=2.220446049250313e-16, >> radix=2, rounds=1) >> Python module path: ['/home/tlinnet/relax-4.0.2', >> '/usr/lib64/python2.6/site-packages/openmpi', >> '/usr/lib64/python2.6/site-packages/wx-2.8-gtk2-unicode', >> '/opt/rh/python27/root/usr/lib64/python27.zip', >> '/opt/rh/python27/root/usr/lib64/python2.7', >> '/opt/rh/python27/root/usr/lib64/python2.7/plat-linux2', >> '/opt/rh/python27/root/usr/lib64/python2.7/lib-tk', >> '/opt/rh/python27/root/usr/lib64/python2.7/lib-old', >> '/opt/rh/python27/root/usr/lib64/python2.7/lib-dynload', >> '/opt/rh/python27/root/usr/lib64/python2.7/site-packages', >> '/opt/rh/python27/root/usr/lib/python2.7/site-packages'] >> >> Python packages and modules (most are optional): >> >> Name Installed Version Path >> >> minfx True 1.0.12 >> /home/tlinnet/relax-4.0.2/minfx >> bmrblib True 1.0.4 >> /home/tlinnet/relax-4.0.2/bmrblib >> numpy True 1.7.1 >> /opt/rh/python27/root/usr/lib64/python2.7/site-packages/numpy >> scipy True 0.12.1 >> /opt/rh/python27/root/usr/lib64/python2.7/site-packages/scipy >> wxPython True 2.8.12.0 (gtk2-unicode) >> /usr/lib64/python2.6/site-packages/wx-2.8-gtk2-unicode/wx >> matplotlib True 1.5.3 >> /opt/rh/python27/root/usr/lib64/python2.7/site-packages/matplotlib >> mpi4py True 2.0.0 >> /opt/rh/python27/root/usr/lib64/python2.7/site-packages/mpi4py >> epydoc True 3.0.1 >> /opt/rh/python27/root/usr/lib/python2.7/site-packages/epydoc >> optparse True 1.5.3 >> /opt/rh/python27/root/usr/lib64/python2.7/optparse.pyc >> readline True >> /opt/rh/python27/root/usr/lib64/python2.7/lib-dynload/readline.so >> profile True >> /opt/rh/python27/root/usr/lib64/python2.7/profile.pyc >> bz2 True >> /opt/rh/python27/root/usr/lib64/python2.7/lib-dynload/bz2.so >> gzip True >> /opt/rh/python27/root/usr/lib64/python2.7/gzip.pyc >> io True >> /opt/rh/python27/root/usr/lib64/python2.7/io.pyc >> xml True 0.8.4 (internal) >> /opt/rh/python27/root/usr/lib64/python2.7/xml/__init__.pyc >> xml.dom.minidom True >> /opt/rh/python27/root/usr/lib64/python2.7/xml/dom/minidom.pyc >> >> relax information: >> Version: 4.0.2 >> Processor fabric: Uni-processor. >> >> relax C modules: >> >> Module Compiled File type >> Path >> >> target_functions.relax_fit True ELF 64-bit LSB shared object, >> x86-64, version 1 (SYSV), dynamically linked, not stripped >> /home/tlinnet/relax-4.0.2/target_functions/relax_fit.so >> --------- >> >> [tlinnet@instance-1 ~]$ source openmpi_test_install_bash.sh >> http://svn.gna.org/viewcvs/*checkout*/relax/trunk/devel_scri >> pts/openmpi_test_install_bash.sh >> Source the commands with: source openmpi_test_install_bash.sh >> Then do: testopenmpi >> >> [tlinnet@instance-1 ~]$ testopenmpi >> This is functions to test openmpi, python and openmpi. >> >> Shell is: /bin/bash >> >> > which mpirun >> /usr/lib64/openmpi/bin/mpirun >> >> > module avail >> >> -------------------------------------------------------------------------------------- >> /usr/share/Modules/modulefiles ------------------------------ >> -------------------------------------------------------- >> dot module-git module-info modules null use.own >> >> ------------------------------------------------------------ >> --------------------------------- /etc/modulefiles >> ------------------------------------------------------------ >> --------------------------------- >> openmpi-1.8-x86_64 openmpi-x86_64 >> >> > lscpu >> Architecture: x86_64 >> CPU op-mode(s): 32-bit, 64-bit >> Byte Order: Little Endian >> CPU(s): 4 >> On-line CPU(s) list: 0-3 >> Thread(s) per core: 2 >> Core(s) per socket: 2 >> Socket(s): 1 >> NUMA node(s): 1 >> Vendor ID: GenuineIntel >> CPU family: 6 >> Model: 62 >> Model name: Intel(R) Xeon(R) CPU @ 2.50GHz >> Stepping: 4 >> CPU MHz: 2500.000 >> BogoMIPS: 5000.00 >> Hypervisor vendor: KVM >> Virtualization type: full >> L1d cache: 32K >> L1i cache: 32K >> L2 cache: 256K >> L3 cache: 30720K >> NUMA node0 CPU(s): 0-3 >> >> > mpirun --version >> mpirun (Open MPI) 1.8.1 >> >> Report bugs to http://www.open-mpi.org/community/help/ >> >> > mpirun --report-bindings -np 2 echo "hello world" >> hello world >> [instance-1:03337] MCW rank 1 bound to socket 0[core 1[hwt 0-1]]: [../BB] >> [instance-1:03337] MCW rank 0 bound to socket 0[core 0[hwt 0-1]]: [BB/..] >> hello world >> >> > mpirun --report-bindings -np 2 python -c 'print " Hello " ' >> [instance-1:03341] MCW rank 1 bound to socket 0[core 1[hwt 0-1]]: [../BB] >> [instance-1:03341] MCW rank 0 bound to socket 0[core 0[hwt 0-1]]: [BB/..] >> Hello >> Hello >> >> > mpirun --report-bindings -np 2 python --version >> [instance-1:03345] MCW rank 1 bound to socket 0[core 1[hwt 0-1]]: [../BB] >> [instance-1:03345] MCW rank 0 bound to socket 0[core 0[hwt 0-1]]: [BB/..] >> Python 2.7.8 >> Python 2.7.8 >> >> > mpirun --report-bindings -np 2 /usr/bin/env python --version >> [instance-1:03349] MCW rank 1 bound to socket 0[core 1[hwt 0-1]]: [../BB] >> [instance-1:03349] MCW rank 0 bound to socket 0[core 0[hwt 0-1]]: [BB/..] >> Python 2.7.8 >> Python 2.7.8 >> >> Testing python, mpi4py and mpirun >> Python 2.7.8 >> Python 2.7.8 >> 2.0.0 >> Mpi4py 2.0.0 process 0 of 2 on instance-1. >> Mpi4py 2.0.0 process 1 of 2 on instance-1. >> >> -------- >> >> [tlinnet@instance-1 ~]$ mpirun --np 2 relax_4.0.2 --multi='mpi4py' >> --version >> relax 4.0.2 >> >> >> >> >> >> 2016-10-03 12:39 GMT+02:00 Troels Emtekær Linnet <tlin...@nmr-relax.com>: >> >>> Hi Sam. >>> >>> The commands reflect the BASH shell and not TCSH. >>> Thats why there i a little difference. >>> >>> Can you display your login script?: >>> >>> One of these should be the right one. >>> cat $HOME/.cshrc >>> cat $HOME/.login, >>> cat $HOME/.tcshrc >>> >>> >>> >>> >>> >>> 2016-10-03 1:50 GMT+02:00 Mahdi, Sam <sam.mahdi....@my.csun.edu>: >>> >>>> Hi Troels, >>>> >>>> Here is the output >>>> source openmpi_test_install.sh >>>> http://svn.gna.org/viewcvs/*checkout*/relax/trunk/devel_scri >>>> pts/openmpi_test_install.sh >>>> Source the commands with: source openmpi_test_install.sh >>>> Then do: testopenmpi >>>> >>>> function: Command not found. >>>> This is functions to test openmpi, python and openmpi. >>>> >>>> Shell is: /bin/tcsh >>>> >>>> > which mpirun >>>> mpirun: Command not found. >>>> >>>> > module avail >>>> >>>> ------------------------ /usr/share/Modules/modulefiles >>>> ------------------------ >>>> dot module-git module-info modules null use.own >>>> >>>> ------------------------------- /etc/modulefiles >>>> ------------------------------- >>>> mpi/mpich-x86_64 mpi/openmpi-x86_64 mpich-x86_64 >>>> >>>> > lscpu >>>> Architecture: x86_64 >>>> CPU op-mode(s): 32-bit, 64-bit >>>> Byte Order: Little Endian >>>> CPU(s): 8 >>>> On-line CPU(s) list: 0-7 >>>> Thread(s) per core: 2 >>>> Core(s) per socket: 4 >>>> Socket(s): 1 >>>> NUMA node(s): 1 >>>> Vendor ID: GenuineIntel >>>> CPU family: 6 >>>> Model: 58 >>>> Model name: Intel(R) Core(TM) i7-3770S CPU @ 3.10GHz >>>> Stepping: 9 >>>> CPU MHz: 3653.640 >>>> CPU max MHz: 3900.0000 >>>> CPU min MHz: 1600.0000 >>>> BogoMIPS: 6186.25 >>>> Virtualization: VT-x >>>> L1d cache: 32K >>>> L1i cache: 32K >>>> L2 cache: 256K >>>> L3 cache: 8192K >>>> NUMA node0 CPU(s): 0-7 >>>> >>>> > mpirun --version >>>> mpirun: Command not found. >>>> >>>> > mpirun --report-bindings -np 2 echo "hello world" >>>> mpirun: Command not found. >>>> >>>> A=": Command not found. >>>> A: Undefined variable. >>>> >>>> >>>> The reason the mpi commands didn't work, is becaues openmpi was not >>>> loaded. I modified your script (added: module load mpi/openmpi-x86_64) and >>>> then got this output >>>> >>>> source openmpi_test_install.sh >>>> http://svn.gna.org/viewcvs/*checkout*/relax/trunk/devel_scri >>>> pts/openmpi_test_install.sh >>>> Source the commands with: source openmpi_test_install.sh >>>> Then do: testopenmpi >>>> >>>> function: Command not found. >>>> This is functions to test openmpi, python and openmpi. >>>> >>>> Shell is: /bin/tcsh >>>> >>>> > which mpirun >>>> /usr/lib64/openmpi/bin/mpirun >>>> >>>> > module avail >>>> >>>> ------------------------------------ /usr/share/Modules/modulefiles >>>> ------------------------------------ >>>> dot module-git module-info modules null use.own >>>> >>>> ------------------------------------------- /etc/modulefiles >>>> ------------------------------------------- >>>> mpi/mpich-x86_64 mpi/openmpi-x86_64 mpich-x86_64 >>>> >>>> > lscpu >>>> Architecture: x86_64 >>>> CPU op-mode(s): 32-bit, 64-bit >>>> Byte Order: Little Endian >>>> CPU(s): 8 >>>> On-line CPU(s) list: 0-7 >>>> Thread(s) per core: 2 >>>> Core(s) per socket: 4 >>>> Socket(s): 1 >>>> NUMA node(s): 1 >>>> Vendor ID: GenuineIntel >>>> CPU family: 6 >>>> Model: 58 >>>> Model name: Intel(R) Core(TM) i7-3770S CPU @ 3.10GHz >>>> Stepping: 9 >>>> CPU MHz: 3733.320 >>>> CPU max MHz: 3900.0000 >>>> CPU min MHz: 1600.0000 >>>> BogoMIPS: 6186.25 >>>> Virtualization: VT-x >>>> L1d cache: 32K >>>> L1i cache: 32K >>>> L2 cache: 256K >>>> L3 cache: 8192K >>>> NUMA node0 CPU(s): 0-7 >>>> >>>> > mpirun --version >>>> mpirun (Open MPI) 1.7.3 >>>> >>>> Report bugs to http://www.open-mpi.org/community/help/ >>>> >>>> > mpirun --report-bindings -np 2 echo "hello world" >>>> hello world >>>> hello world >>>> >>>> A=": Command not found. >>>> A: Undefined variable. >>>> >>>> As to why the report bindings on python didn't work. I don't know what >>>> the A command means, so I don't know what happened there. >>>> >>>> Sincerely, >>>> Sam >>>> >>>> >>>> On Sun, Oct 2, 2016 at 4:16 PM, Troels Emtekær Linnet < >>>> tlin...@nmr-relax.com> wrote: >>>> >>>>> Hi Sam. >>>>> >>>>> Can you try this in your terminal. >>>>> I am trying to write a script, which should check at users setup >>>>> mpirun. >>>>> >>>>> -- >>>>> >>>>> URL=http://svn.gna.org/viewcvs/*checkout*/relax/trunk/devel_ >>>>> scripts/openmpi_test_install.sh >>>>> wget $URL >>>>> >>>>> # Source functions >>>>> source openmpi_test_install.sh >>>>> testopenmpi >>>>> >>>>> 2016-10-01 0:22 GMT+02:00 Troels Emtekær Linnet <tlin...@nmr-relax.com >>>>> >: >>>>> >>>>>> Hi Sam. >>>>>> >>>>>> Can you try: >>>>>> mpirun --version >>>>>> >>>>>> Thanks >>>>>> >>>>>> 2016-10-01 0:00 GMT+02:00 Mahdi, Sam <sam.mahdi....@my.csun.edu>: >>>>>> >>>>>>> Hi Troels, >>>>>>> >>>>>>> Here is a list of the packages I got off of the fedora package list >>>>>>> Openmpi: >>>>>>> openmpi-1.7.3-1.fc.20(64-bit) >>>>>>> openmpi-devel-1.7.3-1.fc20(64bit) >>>>>>> pypar-openmpi-2.1.5_108_3.fc.20(64bit) >>>>>>> python3-mpi4py-1.3.1-1.fc20(64bit) >>>>>>> >>>>>>> Mpi4py >>>>>>> mpi4py-common-1.3.1-1.fc20 >>>>>>> mpi4py-mpich-1.3.1-1.fc20 >>>>>>> mpi4py-openmpi-1.3.1-1.fc20 >>>>>>> python3-mpi4py-mpich-1.3.1-1.fc20 >>>>>>> python3-mpi4py-openmpi-1.3.1-1.fc20 >>>>>>> >>>>>>> Note: I now know the mpich is extra and pointless. I only use the >>>>>>> openmpi when I load my modules. I have not compiled or configured >>>>>>> anything >>>>>>> with these packages. I just installed them directly from the package >>>>>>> list. >>>>>>> If you need any more info on what is installed on these computers let me >>>>>>> know! >>>>>>> >>>>>>> Sincerely, >>>>>>> Sam >>>>>>> >>>>>>> >>>>>>> On Fri, Sep 30, 2016 at 2:23 PM, Troels Emtekær Linnet < >>>>>>> tlin...@nmr-relax.com> wrote: >>>>>>> >>>>>>>> Hi Sam. >>>>>>>> >>>>>>>> I am trying to setup myself on Google Cloud Platform. >>>>>>>> >>>>>>>> Here I setting up for a Redhat 6 distro, in hope it gets close to >>>>>>>> Fedora 20. >>>>>>>> >>>>>>>> I am currently making a deployment script. >>>>>>>> >>>>>>>> The process is written here: >>>>>>>> http://wiki.nmr-relax.com/Run_relax_at_Google_Cloud_Computin >>>>>>>> g#Install_packages_at_server >>>>>>>> >>>>>>>> But that is a little old, since the configurations has changed a >>>>>>>> little since 2015. >>>>>>>> And the last deployment script is for Ubuntu. >>>>>>>> >>>>>>>> Getting the packages right is a pain.... ;) >>>>>>>> >>>>>>>> Let me return when I know some more. >>>>>>>> >>>>>>>> >>>>>>>> >>>>>>>> 2016-09-30 23:03 GMT+02:00 Mahdi, Sam <sam.mahdi....@my.csun.edu>: >>>>>>>> >>>>>>>>> Hi Troels, >>>>>>>>> >>>>>>>>> I attempted the full path >>>>>>>>> mpirun -np 5 ~/relax-4.0.2/relax --multi="mpi4py" -v >>>>>>>>> and still got the same result. No output. >>>>>>>>> >>>>>>>>> Sincerely, >>>>>>>>> Sam >>>>>>>>> >>>>>>>>> On Fri, Sep 30, 2016 at 11:43 AM, Troels Emtekær Linnet < >>>>>>>>> tlin...@nmr-relax.com> wrote: >>>>>>>>> >>>>>>>>>> Hi Sam. >>>>>>>>>> >>>>>>>>>> Hm. Alright. >>>>>>>>>> >>>>>>>>>> But to rule it out in my head, can you try this: >>>>>>>>>> >>>>>>>>>> mpirun -np 5 /home/users/software/relax-4.0.2/relax >>>>>>>>>> --multi="mpi4py" -v >>>>>>>>>> >>>>>>>>>> Or similar destination path. >>>>>>>>>> But please try the full path. >>>>>>>>>> >>>>>>>>>> Best >>>>>>>>>> Troels >>>>>>>>>> >>>>>>>>>> 2016-09-30 19:47 GMT+02:00 Mahdi, Sam <sam.mahdi....@my.csun.edu> >>>>>>>>>> : >>>>>>>>>> >>>>>>>>>>> I get the same results with the full path mpirun -np 5 >>>>>>>>>>> ~/relax-4.0.2/relax --multi="mpi4py" -v >>>>>>>>>>> Still no output. >>>>>>>>>>> >>>>>>>>>>> Sincerely, >>>>>>>>>>> Sam >>>>>>>>>>> >>>>>>>>>>> On Fri, Sep 30, 2016 at 10:39 AM, Troels Emtekær Linnet < >>>>>>>>>>> tlin...@nmr-relax.com> wrote: >>>>>>>>>>> >>>>>>>>>>>> Sam. >>>>>>>>>>>> >>>>>>>>>>>> All points to: >>>>>>>>>>>> "./relax" is NOT calling relax in the current folder. >>>>>>>>>>>> >>>>>>>>>>>> It is because the command "mpirun" is running it. >>>>>>>>>>>> >>>>>>>>>>>> Please provide the FULL path to relax. >>>>>>>>>>>> >>>>>>>>>>>> I think I have written this before. ;) >>>>>>>>>>>> >>>>>>>>>>>> Best >>>>>>>>>>>> Troels >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> 2016-09-30 19:24 GMT+02:00 Mahdi, Sam < >>>>>>>>>>>> sam.mahdi....@my.csun.edu>: >>>>>>>>>>>> >>>>>>>>>>>>> Sorry, you're right, I re-ran the mpirun -np 5 ./relax >>>>>>>>>>>>> --multi="mpi4py" -v >>>>>>>>>>>>> and got no output. So I'm just curious for the other computers >>>>>>>>>>>>> I download >>>>>>>>>>>>> openmpi in, just installing it and compiling it isn't enough? >>>>>>>>>>>>> There are >>>>>>>>>>>>> some configurations you have to make to have it run on relax? >>>>>>>>>>>>> >>>>>>>>>>>>> Sincerely, >>>>>>>>>>>>> Sam >>>>>>>>>>>>> >>>>>>>>>>>>> On Fri, Sep 30, 2016 at 10:17 AM, Edward d'Auvergne < >>>>>>>>>>>>> edw...@nmr-relax.com> >>>>>>>>>>>>> wrote: >>>>>>>>>>>>> >>>>>>>>>>>>> > On 30 September 2016 at 19:12, Mahdi, Sam < >>>>>>>>>>>>> sam.mahdi....@my.csun.edu> >>>>>>>>>>>>> > wrote: >>>>>>>>>>>>> > > Hi Edward, >>>>>>>>>>>>> > > >>>>>>>>>>>>> > > So I ran the the mpirun commands you suggested. The echo >>>>>>>>>>>>> world works >>>>>>>>>>>>> > fine. I >>>>>>>>>>>>> > > get the same results you did. For the relax one, this is >>>>>>>>>>>>> the output I >>>>>>>>>>>>> > > recieved >>>>>>>>>>>>> > > [~/relax-4.0.2]> mpirun -np 5 ./relax --multi="mpi4py" -v >>>>>>>>>>>>> relax 4.0.2 >>>>>>>>>>>>> > > Usage: relax [options] [script_file] >>>>>>>>>>>>> > > >>>>>>>>>>>>> > > RelaxError: incorrect number of arguments >>>>>>>>>>>>> > >>>>>>>>>>>>> > Have a close look at my original text: >>>>>>>>>>>>> > >>>>>>>>>>>>> > [edward@localhost ~]$ mpirun -np 5 >>>>>>>>>>>>> /data/relax/tags/4.0.2/relax >>>>>>>>>>>>> > --multi="mpi4py" -v >>>>>>>>>>>>> > relax 4.0.2 >>>>>>>>>>>>> > [edward@localhost ~]$ >>>>>>>>>>>>> > >>>>>>>>>>>>> > Note how "relax 4.0.2" is on a different line - that is the >>>>>>>>>>>>> relax >>>>>>>>>>>>> > output, not the command line input. Try again without that >>>>>>>>>>>>> text. >>>>>>>>>>>>> > >>>>>>>>>>>>> > >>>>>>>>>>>>> > > RelaxError: ambiguous option: --v (--verification-tests, >>>>>>>>>>>>> --version?) >>>>>>>>>>>>> > >>>>>>>>>>>>> > This is because the double-dash to single-dash conversion is >>>>>>>>>>>>> only in >>>>>>>>>>>>> > the HTML version of the relax manual, and not emails. Run >>>>>>>>>>>>> "relax -h" >>>>>>>>>>>>> > to see a description of this option. >>>>>>>>>>>>> > >>>>>>>>>>>>> > >>>>>>>>>>>>> > > Also, the reason its ./relax is because I have relax 2.2.5 >>>>>>>>>>>>> installed, >>>>>>>>>>>>> > and I >>>>>>>>>>>>> > > have that set up as an Alias, so if I just type relax, >>>>>>>>>>>>> it'll open up >>>>>>>>>>>>> > relax >>>>>>>>>>>>> > > 2.2.5. So I went to the actual relax-4.0.2. directory >>>>>>>>>>>>> instead of >>>>>>>>>>>>> > indicating >>>>>>>>>>>>> > > its path and just typed ./relax. (By I, I mean the >>>>>>>>>>>>> administrator of this >>>>>>>>>>>>> > > computer, I do not have root access to this computer). >>>>>>>>>>>>> > >>>>>>>>>>>>> > You should set your alias to the relax-4.0.2 version >>>>>>>>>>>>> instead. The >>>>>>>>>>>>> > 2.2.5 version is very, very old, and many bugs have been >>>>>>>>>>>>> fixed since >>>>>>>>>>>>> > then. >>>>>>>>>>>>> > >>>>>>>>>>>>> > Regards, >>>>>>>>>>>>> > >>>>>>>>>>>>> > Edward >>>>>>>>>>>>> > >>>>>>>>>>>>> _______________________________________________ >>>>>>>>>>>>> relax (http://www.nmr-relax.com) >>>>>>>>>>>>> >>>>>>>>>>>>> This is the relax-users mailing list >>>>>>>>>>>>> relax-users@gna.org >>>>>>>>>>>>> >>>>>>>>>>>>> To unsubscribe from this list, get a password >>>>>>>>>>>>> reminder, or change your subscription options, >>>>>>>>>>>>> visit the list information page at >>>>>>>>>>>>> https://mail.gna.org/listinfo/relax-users >>>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>>> >>>>>>>>>>> >>>>>>>>>> >>>>>>>>> >>>>>>>> >>>>>>> >>>>>> >>>>> >>>> >>> >> > _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-users mailing list relax-users@gna.org To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
