Re: [R-sig-phylo] corHMM reconstruction not estimating internal node states

version of the package! For future reference, if someone reading this needs to update corHMM: install.packages("devtools") library(devtools) install_github("thej022214/corHMM") Thanks again - I'm excited to work with these tools! :) , Michael Foisy MSc. Student University of

[R-sig-phylo] Simulating data under precursor models

, 4, NA, NA, 3, NA), 4, byrow = TRUE) # I would add in zeros and balance the gain and loss rates, etc., depending on what package requires.. Thanks a lot! , Michael Foisy MSc. Student, Rodd and Mahler Labs Univers

Re: [R-sig-phylo] Simulating data under precursor models

P.S. -- I should add that I do have estimated rates for my precursor model(s)... I'm not sure why I presented the matrix like that. , Michael On Wed, May 11, 2016 at 1:34 PM, Michael Foisy < michael.fo...@mail.utoronto.ca> wrote: > Hi, > > > I'm running a statistical analy

[R-sig-phylo] [function like ratebystate, but for discrete characters?]

! Thank you! , Michael Foisy MSc. Student University of Toronto michael.fo...@mail.utoronto.ca [[alternative HTML version deleted]] ___ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo

Re: [R-sig-phylo] [function like ratebystate, but for discrete characters?]

n; they're just phenotypically distinct). J! ust want to make sure I'm using the right models for the traits I'm looking at! I hope that was clear... Thank you very much! , Michael Foisy MSc. Student University of Toronto michael.fo...@mail.utoronto.ca From: