Dear everyone,
Is there any straight forward way to do deltran specific parsimony ancestral
character state reconstruction in R?
I already know about using Phangorn for MPR and acctran. The function
fitch.mvsl in the package mvSLOUCH may be useable but the documentation for the
output of that function is not particularly useful, it's difficult to work out
which state goes with which node on the tree. Apparently fitch.mvsl is modified
from fitch in the slouch package but I can't seem to find documentation for
that on CRAN, it just points me back at the mvSLOUCH package.
Maybe it's as simple as changing a value or sign in a function within
ancestral.pars in the phangorn package, but if that's the case it's not obvious
from the code.
Martin.
Natural History Museum London.
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