Re: [R-sig-phylo] Plotting uncertainty in continuous ASR

dded to the blog is perfectly fine. Best wishes, Kev From: Liam J. Revell [liam.rev...@umb.edu] Sent: 27 February 2017 21:57 To: Arbuckle, Kevin; R phylo list Subject: Re: [R-sig-phylo] Plotting uncertainty in continuous ASR Hi Kevin. I now show one way t

Re: [R-sig-phylo] Plotting uncertainty in continuous ASR

Hi Dave. Yes. It is not perfect, but I have shown how to do this here: http://blog.phytools.org/2017/02/more-on-adding-error-bars-to-contmap.html. All the best, Liam Liam J. Revell, Associate Professor of Biology University of Massachusetts Boston web: http://faculty.umb.edu/liam.revell/

Re: [R-sig-phylo] Plotting uncertainty in continuous ASR

-sig-phylo@r-project.org Subject: Re: [R-sig-phylo] Plotting uncertainty in continuous ASR Hi Kevin. This is not automatic - but it is indeed fairly easy to do using phytools. To be honest, I thought this would look terrible - but it actually looks much better than I expected, at least

Re: [R-sig-phylo] Plotting uncertainty in continuous ASR

That's really cool, Liam. Would it also be possible for one to do multiple such error bars per node, for plotting ASRs for multiple traits? -Dave On Mon, Feb 27, 2017 at 12:13 PM, Liam J. Revell wrote: > Hi Kevin. > > This is not automatic - but it is indeed fairly easy to

[R-sig-phylo] Plotting uncertainty in continuous ASR

Hi all, I was wondering about plotting the output of an ancestral state 'reconstruction' of a continuous trait while incorporating at least some of the uncertainty around the estimates. One approach I thought of was to map the ASR onto a tree in a standard way, then at each node have