Re: [R-sig-phylo] error when using function read.GenBank in ape

Ah, OK, it makes sense then. Thank You for this key point. :-) Yours, V. Dne pondělí 21. listopadu 2016 19:03:03 CET jste napsal(a): > Maybe I can clarify this point... The testing versions of ape are not > intended to be on CRAN. That's why they have version numbers with four > parts, so that

Re: [R-sig-phylo] error when using function read.GenBank in ape

Maybe I can clarify this point... The testing versions of ape are not intended to be on CRAN. That's why they have version numbers with four parts, so that they are always larger than the current version number on CRAN but less than the upcoming one. Thus, the update mechanism of R should work

Re: [R-sig-phylo] error when using function read.GenBank in ape

Hello, Emmanuel, the problem was/is, that CRAN has version 3.5 (further subversion not specified) and there read.GenBank is broken. Installation from Your web went fine. i was wondering if 3.5.10 or above is/should be in CRAN. The fix() is nice trick, thank You. Anyway, I'm looking forward 4.0.

Re: [R-sig-phylo] error when using function read.GenBank in ape

Hi Vojtěch, ape 4.0 is not yet on CRAN. We are running more tests. You could use the testing version: there won't be substantial changes once it is on CRAN. If you cannot install the testing version from ape-package.ird.fr (maybe mostly for users of MacOS with no compiling tools), a simple

Re: [R-sig-phylo] error when using function read.GenBank in ape

Hi Emmanuel, Right! Sorry I misspoke. Best, Eduardo 2016-11-11 23:32 GMT+01:00 Emmanuel Paradis : > Hi Eduardo & Ting-Wen, > > ape 4.0 is not yet released. The available version is 3.5-0.10 and, you > are right Eduardo, it fixes this issue. The instructions to install

Re: [R-sig-phylo] error when using function read.GenBank in ape

Hi Eduardo & Ting-Wen, ape 4.0 is not yet released. The available version is 3.5-0.10 and, you are right Eduardo, it fixes this issue. The instructions to install this new version of ape is here: http://ape-package.ird.fr/ape_installation.html#versions The issue (not really a bug, strictly

Re: [R-sig-phylo] error when using function read.GenBank in ape

Hi Ting-Wen. Are you using the latest version of ape? Emmanuel released ape v.4.0 yesterday with a bug fix for that function. Best, Eduardo 2016-11-11 0:35 GMT+01:00 Chen, Ting-Wen < ting-wen.c...@biologie.uni-goettingen.de>: > Dear all, > > recently I got an error when downloading sequences

[R-sig-phylo] error when using function read.GenBank in ape

Dear all, recently I got an error when downloading sequences in R using MacOS 10.12 (but no problem when using WIndows 7). I was using the function read.GenBank in package ape and pretty sure my laptop was connecting to the internet. Following is how the error looks like: R version 3.3.2