Re: [R-sig-phylo] simulating gene trees on a given species tree and theta

Hi Carlos, I would check out phybase at http://faculty.franklin.uga.edu/lliu/content/phybase . I have used it to simulate gene trees from species trees. It works quite well and is very fast. -Dan From: R-sig-phylo on

Re: [R-sig-phylo] simulating gene trees on a given species tree and theta

to install phybase from the CRAN archive: install.packages("https://cran.r-project.org/src/contrib/Archive/phybase/phybase_1.1.tar.gz;, repos = NULL, type="source") Cécile On Dec 18, 2016, at 4:26 AM, Liam J. Revell > wrote: Hi John. I believe

Re: [R-sig-phylo] simulating gene trees on a given species tree and theta

Hi John. I believe this used to be possible using the package phybase. Unfortunately, this package was not being maintained & was removed from CRAN - however archived package versions can still be obtained (so it may be possible to install from source). All the best, Liam Liam J. Revell,