On Thu, May 11, 2017 at 4:52 PM, Gianluca Sforna <gia...@gmail.com> wrote:
> The really weird failures are the the i686 ones, where all the tests
> passed with python2, while a large number of them segfaulted on
> python3.
So I digged this issue further and got this backtrace of one segfault
#0 0xf5381914 in boost::python::objects::enum_base::add_value(char
const*, long) () from /lib/libboost_python3.so.1.60.0
#1 0xf4d9c00b in
boost::python::enum_<RDKit::PicklerOps::PropertyPickleOptions>::value
(x=RDKit::PicklerOps::AllProps,
name=0xf4dcd94a "AllProps", this=0xffffabac) at
/usr/include/boost/python/enum.hpp:95
#2 RDKit::mol_wrapper::wrap () at
/builddir/build/BUILD/rdkit-Release_2017_03_1/python3/Code/GraphMol/Wrap/Mol.cpp:294
#3 0xf4d84c15 in wrap_mol () at
/builddir/build/BUILD/rdkit-Release_2017_03_1/python3/Code/GraphMol/Wrap/Mol.cpp:711
#4 0xf4d3945a in init_module_rdchem () at
/builddir/build/BUILD/rdkit-Release_2017_03_1/python3/Code/GraphMol/Wrap/rdchem.cpp:185
This seems to be related to the symbol AllProps, that was already
changed to fix #1351
https://github.com/rdkit/rdkit/pull/1351
but probably still not suitable for use on 32bit linux; I read some
pages around about the issue [1, 2] but I am still not sure abut the
most reliable way to fix it. My takeaway is that we are not using a
really robust approach, but with C++11 there is a slightly better
method[3,4]; of course that would not help with the current release...
Ideas?
[1]
http://stackoverflow.com/questions/12059774/c11-standard-conformant-bitmasks-using-enum-class
[2] http://stackoverflow.com/questions/1448396/how-to-use-enums-as-flags-in-c
[3] http://blog.bitwigglers.org/using-enum-classes-as-type-safe-bitmasks/
[4]
https://www.justsoftwaresolutions.co.uk/cplusplus/using-enum-classes-as-bitfields.html
--
Gianluca Sforna
http://plus.google.com/+gianlucasforna - http://twitter.com/giallu
Tinker Garage - http://tinkergarage.it
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