[Rdkit-discuss] Incorrect results for substructure search obtained with Tversky similarity.

2016-12-12 Thread Axel Rudling
Hello all, Currently I'm doing a project with Tversky searching in substructure mode and use smiles for creating fingerprints. For most molecules I get the correct result but there are some molecules where I get an overflow of falsely predicted substructure molecules. In brief, I get a large

Re: [Rdkit-discuss] Incorrect results for substructure search obtained with Tversky similarity.

2016-12-12 Thread Axel Rudling
hope this helps. > > > Brian Kelley > > On Dec 12, 2016, at 11:29 AM, Axel Rudling <axru6...@gmail.com> wrote: > > Hello all, > > Currently I'm doing a project with Tversky searching in substructure mode > and use smiles for creating fingerprints. >

[Rdkit-discuss] SubstructureMatch

2017-01-09 Thread Axel Rudling
Hello, I've been benchmarking different softwares for substructure searching of molecules. From what I can tell, RDKits substructureMatch appears to do the job. I have been looking around the documentation and this forum for a description of how it actually works. As I understand it, it does the