Hi Tyler,
That's a perfectly reasonable request and it is something that you should
be able to do with the RDKit reaction handling code, but unfortunately it
is not currently possible.
This type of problem tends to not have a quick fix, but I will take a look
and see.
-greg
On Sat, Aug 12,
I am trying to write a series of dehydratase reactions with RDKit that
create specific double bond stereochemistry, but I have found that if
I install one double bond, it often reverses the stereochemistry on
other bonds, if they are present.
For example, I create the following molecule which
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