This is a very frustrating error that I've had on numerous occasions
with a myriad of different packages, I've never really known what I've
done to resolve it however I've found that using python 2.6 and gcc 4.0
seems to be much better for installing python packages, you can change
the symlink /bin/gcc to point to gcc-4.0 (if you don't have it you can
get it from the developer tools package).
admiral.da...@gmail.com wrote:
Hi,
I'm trying to install rpy2 on a Mac running Mac OS 10.6.4. The Mac has
R version 2.11.1, Python 2.6.2, and gcc version 4.2.1.
When I try to install rpy2 (version 2.1.3), I get the following error
message:
>python setup.py install
running install
running build
running build_py
running build_ext
building 'rpy2.rinterface.rinterface' extension
gcc -arch ppc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk
-fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -O3
-DR_INTERFACE_PTRS=1 -DHAVE_POSIX_SIGJMP=1 -DCSTACK_DEFNS=1
-DRIF_HAS_RSIGHAND=1 -Irpy/rinterface
-I/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6
-I/Library/Frameworks/R.framework/Resources/include
-I/Library/Frameworks/R.framework/Resources/include/x86_64 -c
rpy/rinterface/rinterface.c -o
build/temp.macosx-10.3-fat-2.6/rpy/rinterface/rinterface.o
-F/Library/Frameworks/R.framework/.. -framework R
-L/Library/Frameworks/R.framework/Resources/lib/x86_64 -lRlapack
-L/Library/Frameworks/R.framework/Resources/lib/x86_64 -lRblas
In file included from
/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6/unicodeobject.h:4,
from
/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6/Python.h:85,
from rpy/rinterface/rinterface.c:55:
/Developer/SDKs/MacOSX10.4u.sdk/usr/include/stdarg.h:4:25: error:
stdarg.h: No such file or directory
In file included from
/Library/Frameworks/R.framework/Resources/include/R.h:31,
from rpy/rinterface/rinterface.c:61:
/Developer/SDKs/MacOSX10.4u.sdk/usr/include/float.h:8:24: error:
float.h: No such file or directory
In file included from
/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6/unicodeobject.h:4,
from
/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6/Python.h:85,
from rpy/rinterface/rinterface.c:55:
/Developer/SDKs/MacOSX10.4u.sdk/usr/include/stdarg.h:4:25: error:
stdarg.h: No such file or directory
In file included from
/Library/Frameworks/R.framework/Resources/include/R.h:31,
from rpy/rinterface/rinterface.c:61:
/Developer/SDKs/MacOSX10.4u.sdk/usr/include/float.h:8:24: error:
float.h: No such file or directory
lipo: can't figure out the architecture type of:
/var/folders/rB/rBpMjOcPHy4U9XEiefEwiU+++TM/-Tmp-//cc7cmLKe.out
error: command 'gcc' failed with exit status 1
After some googling, I see that others have gotten the same error, but
I can't figure out whether it's my version of gcc, Python, or R that
is causing the problem (the problem seemed to happen to other people
with a variety of combinations of versions). Does anyone have any
ideas of what I can try?
Thanks so much in advance!
-David
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