There is a Java API called jjack but only a lowbrow will use it, normally people will use the C API ;).
I might be arrogant, but Google search yourself and you will see, C and C++ is most common for Linux. There are some dinosaurs that re-program shell commands by using assembler, because they also not fine with that "evil" C and C++ compilers and the findings that Linux C compilers does.
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