I'm using Android Studio 0.8.14.
When debugging, in a callstack I can see that some lines are highlighted in 
yellow (marked on the pic with red box) and some are not:

<http://i.stack.imgur.com/YESL6.jpg>If I click on those lines that 
highlighted then a corresponding file is brought up in editor and the 
breakpoint is highlighted in blue: <http://i.stack.imgur.com/YESL6.jpg>

<http://i.stack.imgur.com/lUDRw.jpg>

The files that are brought up with a breakpoint selected shown with .class 
extension 
in the editor:

<http://i.stack.imgur.com/UMKJV.jpg>

However, when I click on the lines that are not highlighted they do not 
brought up any .class files and do not show blue highlighting of breakpoint 
in the editor.  Why is that?

Some of those lines that are not highlighted correspond to the Cordova 
Library that I'm using. This library is added to the project as .java files 
but contains its own gradle.build file and during building process is built 
into .aar files. It then included into the final build using the following 
code in gradle.build file that correspons to the entire project:
dependencies {



    compile fileTree(dir: 'libs', include: '*.jar')

    for (subproject in getProjectList()) {

        compile project(subproject)

    }



}



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