When I'm designing tables, I try and decouple unrelated data by separating
them into two or more tables.  This is making the schema more normalized.
In the case where you've already deployed a database with a given schema,
I would further laud keeping the data in separate tables (your option
ii).  This ensures that database schema will work with multiple versions
of the app, as it's not much fun (possible?) trying to update all the
clients that access one remote SQL Server all at the same time.

Foreign keys and triggers can be defined (I believe Visio does this for
you automatically) to validate data upon insert and ensure no orphans in
the newly added table.

I've got many tables that simply contain two columns: two ids that link a
row in one table with the row in another (one-to-one relationship)--
without having any direct dependency of one table to the other.

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