Thanks for the additional suggestions....and the laugh.  "Pain in the ass" 
might be an understatement.  I've been profiling the app with YourKit, and 
have stamped out bottlenecks and memory leaks as far as I can tell.  It 
detects no deadlocks.  I've done this both locally on my laptop, and also 
by running a profiling agent on the server and sending the results to my 
laptop.  It appears to be quite stable in it's operation, which is why I've 
been wondering about OS level settings, etc.  Interestingly, when I do a 
diff on the profiles (one obtained on the laptop and the other on the 
server), the server shows slower interval runtimes across the board.

I'll take a look at the tools you suggested, and also install the Oracle 
JVM.

Thanks,
Bruce

On Thursday, 27 March 2014 11:25:43 UTC-4, Alexandru Nedelcu wrote:
>
> On Thu, Mar 27, 2014 at 5:17 PM, Bruce <[email protected] <javascript:>>wrote:
>
>> Another thing that is puzzling to me is that when I run the application 
>> on my laptop (MacBook Pro Retina with a SSD, 16 GB RAM, JDK1.6) on a 
>> smaller amount of data it works very well.  However, when I run it on the 
>> server (CentOS 5, also with a SSD, 320GB RAM, JDK1.6) on the same smaller 
>> data set, it pretty much grinds to a halt. 
>
>
> That's weird behavior. Try updating the JDK on your Cent OS machine. If 
> you're using OpenJDK, try the official Oracle JDK.
>
> Also, anecdotically speaking, working with huge heap sizes and a garbage 
> collected environment is a pain in the ass.
>
> -- 
> Alexandru Nedelcu
> www.bionicspirit.com
>
> PGP Public Key:
> https://bionicspirit.com/key.aexpk 
>

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