Almost certainly yes, but that website also gives the links to the files used in the benchmark. So you can just check yourself.
On 8 August 2014 10:23, [email protected] <[email protected]> wrote: > Here is Google Suffix array testing result website. > > https://sites.google.com/site/yuta256/sais > > I want to know if the testing corpus contains DNA bio information? > > It has a file named chr22.dna. Is it chromosome 22 DNA? > > Weng > > On Thursday, August 7, 2014 6:26:19 PM UTC-7, [email protected] wrote: >> >> I am developing a new algorithm constructing Suffix Array that is not >> based on KA, AS-IS or Skew algorithms. Its performance depends on Max(LCPs) >> (the largest of longest common prefix) of the suffix array. It will >> work perfectly for 8-bit character string without any code change. It needs >> some refine to deal with genome code. >> >> I want to know some special knowledge about genome DNA testing code. I >> know nothing about DNA sequence and biology. >> >> 1. Which are the best books about genome DNA sequence processing >> suitable for me who is developing a new algorithm constructing suffix array >> and want the algorithm better workable for DNA analyses. >> 2. I want to know if there is any algorithm constructing Suffix Array >> whose performance depends on Max(LCPs)? >> 3. Genome DNA testing file contains only 4 characters: A,C,G and T. Is >> it right? I found another char U in RNA. Does the file still contain 4 >> characters? >> 4. If the number of chars in a file is limited to 4, and all repeatable >> patterns are known, I can specially design some technical refinement to >> improve my algorithm performance. I want know, in addition to 1 char, 2 >> chars, 3 chars and 4 chars repentance, 5 chars or >> more repeatable sequence are common? And if common, the largest common >> chars repentance contains how many different chars? >> 1 char repentance: AAAAAAAA... >> 2 char repentance: ACACACACACACACA... >> >> Thank you. >> >> Weng >> >> -- > You received this message because you are subscribed to the Google Groups > "Algorithm Geeks" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > -- You received this message because you are subscribed to the Google Groups "Algorithm Geeks" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected].
