It's actually very simple.
# adb shell
# su
# cd /sys/devices/system/cpu/cpu0/cpufreq
Your looking for scaling_*. Basically scaling_max_freq (you can use the 
numbers from scaling_available_frequencies). To set a frequency simply write 
to scaling_max_freq.
Example:
# echo 1197000 > /sys/devices/system/cpu/cpu0/cpufreq/scaling_max_freq

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